Fetching datasets from the Internet Downloading Datasets Fetching datasets from the Internet

Let's Get Data http://www.emboss.org

Downloading From The Web $ man wget

Using wget to download PDB data-files $ mkdir structures $ cd structures $ wget ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb1m7t.ent.Z $ wget ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb1lqt.ent.Z $ gzip -d pdb1m7t.ent.Z pdb1lqt.ent.Z

Mirroring a dataset $ wget --mirror ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb

Maxim 9.1 Only download a dataset when absolutely necessary. Consider the implications of doing so first

Smarter mirroring structures/ftp.rcsb.org/pub/pdb/data/structures/all/pdb $ wget --output-file=log --mirror --http-user=anonymous --http-passwd=email@where.ever.net --directory-prefix=structures/mmCIF --no-host-directories --cut-dirs=6 ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb

Downloading a subset of a dataset $ wget ftp://beta.rcsb.org/pub/pdb/uniformity/data/mmCIF/all/1ger.cif.Z

Where To From Here