Single-cell phenotyping with Traitar.

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Single-cell phenotyping with Traitar. Single-cell phenotyping with Traitar. We used 20 genome assemblies with various degrees of completeness from single cells of the “Candidatus Cloacimonetes” phylum and a joint assembly for phenotyping with Traitar. Shown is a heat map of assembly samples versus phenotypes, which is the standard visualization for phenotype predictions in Traitar. The origin of the phenotype’s prediction (Traitar phypat and/or phypat+PGL classifier) determines the color of the heat map entries. The sample labels have their genome completeness estimates as suffixes. The colors of the dendrogram indicate similar phenotype distributions across samples, as determined by a hierarchical clustering with SciPy (http://docs.scipy.org/doc/scipy/reference/cluster.hierarchy.html). Aaron Weimann et al. mSystems 2016; doi:10.1128/mSystems.00101-16