Taxonomy assessment of metagenes with differential abundance as a result of the AXOS intervention. Taxonomy assessment of metagenes with differential abundance.

Slides:



Advertisements
Similar presentations
Total Population of Age (Years) of People that Smoke
Advertisements

Scaffold Download free viewer:
Chapter 8 Interval Estimates For Proportions, Mean Differences And Proportion Differences.
Graphs Earth Science.
Sample Column Chart- No Data Labels, no lines SOURCE:
Behaviorally dependent allele-specific expression.
Microbiome differences in disease severity and stable or exacerbation visits. Microbiome differences in disease severity and stable or exacerbation visits.
Heatmap displaying consistent similarity-based OTU results based on SIMPER intragroup similarity analyses for the tissue, mucus, holobiont, and seawater.
Vijay R. Ramakrishnan, MD, Leah J. Hauser, MD, Leah M
Heredity and Classification
Transdomain taxonomic profiles from subway shotgun metagenomes.
Which graph should I use?
The butyrate-producing community during disturbance.
Intervention effects on taxonomic and functional pathway diversity of the intestinal microbiome. Intervention effects on taxonomic and functional pathway.
Fractions of 16S rRNA genes from bacteria (top panel) and archaea (bottom panel) in public databases from primer-amplified metagenomes (with and without.
Microbial diversity of the 10 body locations sampled.
Rank abundance plots by taxonomic genus assignments for metagenomic data (top three rows) and metatranscriptomic data (bottom two rows). Rank abundance.
BMDC-EV induce phenotypically different myeloid cell sub-populations.
Bacteroidetes bacteria are the main contributors to LPS biosynthesis in the human gut microbiome. Bacteroidetes bacteria are the main contributors to LPS.
(A) Heat maps illustrate the percent abundances of the most abundant genera (all OTUs taxonomically classified to the same genus were collapsed into a.
Statistical comparison of metabolites and analysis of differential metabolites and key metabolic pathways. Statistical comparison of metabolites and analysis.
Box plots of quality scores over positions in sequenced reads.
Structure of benthic microbial communities of residential and industrial land use types before and after two rain events in urban waterways are shown.
Pairwise analysis of detected virus taxonomy prior to and following intervention. Pairwise analysis of detected virus taxonomy prior to and following intervention.
Heatmaps of differential OTUs
Comparison of distal gut metabolite profiles between Egyptian and U. S
Bacteria significantly correlated with DE miRNAs.
Example usage of mockrobiota MC resource for marker gene and metagenome sequencing pipelines. Example usage of mockrobiota MC resource for marker gene.
Differential relative abundance of major taxa for successive pairwise comparisons. Differential relative abundance of major taxa for successive pairwise.
The similar shifts of gut microbiota in IBD across cohorts.
Functional enrichment of differentially expressed genes.
Enterotypes of the distal gut microbial profiles.
Distribution of microbial functions in urban waterways.
Comparison of the original ITS primer pair and the new, modified ITS primer pair. Comparison of the original ITS primer pair and the new, modified ITS.
Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.
Four major patterns identified through hierarchical clustering plotted by IPD ratio over time. Four major patterns identified through hierarchical clustering.
Metabolite predictability is consistent between vaginal and mouse cecal data sets. Metabolite predictability is consistent between vaginal and mouse cecal.
Study design and taxonomic composition of vaginal fluid metatranscriptomes in BV during and after treatment with metronidazole. Study design and taxonomic.
Trends in metabolite predictability in terms of key gene contributors.
Framework for integrating taxonomic and metabolomic data.
Enrichment of microbial functions with elevated triclosan.
Nuclear DNA signal is altered in Chd5-deficient NSCs.
Compositional PCA plot of samples (A) and OTU loadings (B) for the initial data set. Compositional PCA plot of samples (A) and OTU loadings (B) for the.
Exploration of gut and skin microbiome of the habitat switching experiment with Calour. Exploration of gut and skin microbiome of the habitat switching.
PKS distribution. PKS distribution. (A) Network map for known (purple) and unknown (yellow) PKS clusters, with the cluster number at each node and the.
Effects of the dietary intervention on urine metabolome.
Transcriptome changes in Cnot6l knockout oocytes and zygotes.
Gut microbiota components influenced by AXOS intake.
Microbial composition of mother and infant samples and shared bacteria within mother-infant pairs. Microbial composition of mother and infant samples and.
Differentially abundant OTUs and higher taxonomic units across geography and diet. Differentially abundant OTUs and higher taxonomic units across geography.
Gain of function in the gut microbiome as a consequence of AXOS ingestion. Gain of function in the gut microbiome as a consequence of AXOS ingestion. Overrepresented.
Kinetics of clone appearance, size, persistence, and lineage content.
Relationship between relative abundance and transcription/abundance ratio (logarithmic scales) of OTUs (brown), ZOTUs (turquoise), and population genomes.
Microbial differences found between TPC- and PBS-treated mice with lupus. Microbial differences found between TPC- and PBS-treated mice with lupus. (A)
Distribution of ARGs in RefSoil genomes and plasmids.
Cyanophage-host interactions from metatranscriptomic data.
(a) Molecular network clusters of pheophytin and procyanidin and their related metabolites. (a) Molecular network clusters of pheophytin and procyanidin.
Differences in Verrucomicrobia genera across plant community types.
KEGG categories of host DEGs (up- and downregulated genes) enriched at selected points after φAbp1 infection. KEGG categories of host DEGs (up- and downregulated.
PCoA plots of subgingival samples with disease classification overlaid
The cystic fibrosis (CF) lower airways metagenome: cumulative presentation of data sets. a, b) Box plot presentation of the absolute frequency and the.
Transformation of materials in lignocellulosic ethanol conversion residues by an anaerobic microbiome and abundance of MAGs. During 120 days of reactor.
Double-hierarchical clustering analysis.
Hierarchically clustered heat map showing correlations between the relative abundances of microbial species and the levels of volatile compounds in kefir.
Comparison of distal gut microbiota composition between Egyptian and U
Northern shovelers may have unique microbiome differences with respect to IAV infection, relative to the other duck species. Northern shovelers may have.
Dietary choline is required for TMAO accumulation.
Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.
Differential abundance of metabolites in the sera of HVs and TPs
Community state types of the uncircumcised coronal sulcus microbiome.
Presentation transcript:

Taxonomy assessment of metagenes with differential abundance as a result of the AXOS intervention. Taxonomy assessment of metagenes with differential abundance as a result of the AXOS intervention. (A) Genus and species distribution of the underrepresented metagenes in the metagenome of samples after AXOS intervention. (B) Similar analysis as in panel A for the overrepresented metagenes. Pie charts indicate the distribution at genus level, whereas bar plots indicate the distribution of the main species; the color coding is maintained accordingly. “Unknown” is used for taxonomic categories showing an identity score lower than 70% and no taxonomy defined at genus level. Those with a score identity higher than 70% and equal matching with several species from the different genera are shown as “Uncertain.” Numbers inside parentheses show the number of genera or species in addition to those shown in the graph. Alfonso Benítez-Páez et al. mSystems 2019; doi:10.1128/mSystems.00209-19