Software Prototyping, Training and Networking

Slides:

Advertisements

Similar presentations

Welcome 26 September st PRAGMA Institute. Conceptual Framework for Building and Sustaining Community (e) Science Previously Unobtainable Observations.

Advertisements

BIOINFORMATICS Ency Lee.

Bioinformatics and the Engineering Library ASEE 2008 Amy Stout.

Overview of Biomedical Informatics Rakesh Nagarajan.

Flying to the Top, One Tweet at a Time: Using Social Media to Rank Online Search Results Robyn B. Reed, MA, MLIS Co-authors: Carrie L. Iwema, PhD, MLS.

National Cancer Institute U.S. DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health NCI Perspective on Informatics and Clinical Decision.

THE NATIONAL CENTER FOR BIOMEDICAL ONTOLOGY Ontology-based Tools to Enhance Data Curation Trish Whetzel, PhD Outreach Coordinator December 9, 2010.

University R&D: Fueling the CT Economy Rensselaer at Hartford Dr. Lynn DeNoia, Clinical Professor Department of Engineering and Science.

Polymorphisms – SNP, InDel, Transposon BMI/IBGP 730 Victor Jin, Ph.D. (Slides from Dr. Kun Huang) Department of Biomedical Informatics Ohio State University.

Using the Drupal Content Management Software (CMS) as a framework for OMICS/Imaging-based collaboration.

Bioinformatics is the application of computer science and information technologies to the processing and analysis of biological data. Bioinformatics is.

 Lisa Federer, Research Informationist UCLA Louise M. Darling Biomedical Library.

Institute of Systems Biology (INBIOSIS)/ School of Biosciences & Biotechnology (Faculty of Science & Technology), Bioinformatics Development in Malaysia.

© What do bioinformaticians do?

W HAT I S ( AND I SN ’ T ) I NFORMATICS Dr. Matthew Barnes, MD.

Bio-IT World Asia, June 7, 2012 High Performance Data Management and Computational Architectures for Genomics Research at National and International Scales.

Library-based Support for Clinical and Translational Research: The Informationist Michele R. Tennant, PhD, MLIS, AHIP Health Science Center Libraries and.

Department of Health and Human Services National Institutes of Health National Center for Research Resources Division of Research Infrastructure Extending.

Mark van Rossum Mark van Rossum Edinburgh.

The iPlant Collaborative Community Cyberinfrastructure for Life Science Tools and Services Workshop Objectives.

Advancing Science with DNA Sequence Undergraduate Genomics in a Research University Environment A Collaborative Effort between the JGI and UC Merced M.

The iPlant Collaborative Community Cyberinfrastructure for Life Science Network for Integrating Bioinformatics into Life Sciences Education April, 2014.

David R. McWilliams, Ph.D. Section of Statistical Genetics, Department of Biostatistical Sciences, Center for Public Health Genomics Bioinformatician IV.

(Bio)Informatics Reference Management: “Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web” (Hull et al, 2008) Paulo Nuin.

Component 6 - Health Management Information Systems Unit 1-2 What is Health Informatics?

Next Generation Sequencing pipeline: a joint LONI – BIRN [UCLA – UCI] collaborative project F. Macciardi – March 16, 2011.

Academic Computing Daniella Meeker, PhD Director, Clinical Research Informatics SC-CTSI Assistant Professor of Preventive Medicine and Pediatrics.

Stian Soiland-Reyes myGrid, School of Computer Science University of Manchester, UK UKOLN DevSci: Workflow Tools Bath,

Jim Bednar November 2010 Doctoral Training Centre in Neuroinformatics and Computational Neuroscience.

From the Advanced Search page of the Cochrane Library, we have clicked on the Cochrane Reviews: By Topic hyperlink. This has displayed the Topics for Cochrane.

Applied Edge Detection in Zoological Collections Inselect Prototype Laurence Livermore Vladimir Blagoderov, Alice Heaton, Pieter Holtzhausen Lawrence Hudson,

An approach to carry out research and teaching in Bioinformatics in remote areas Alok Bhattacharya Centre for Computational Biology & Bioinformatics JAWAHARLAL.

The iPlant Collaborative Community Cyberinfrastructure for Life Science Tools and Services Workshop …and Environments.

Taverna in App4Andy. Current status Version 1.0 – AWS-based NGS annotation pipeline – Completed Boran, N’Dama, Cape Buffalo Processed Watson data through.

An Introduction to NCBI & BLAST National Center for Biotechnology Information Richard Johnston Pasadena City College.

Interdisciplinary Research Interests.

NIH: DATA SCIENCE & BD2K Jennie Larkin, PhD Senior Advisor, Extramural Programs and Strategic Planning Office of the Associate Director for Data Science,

A Librarian’s Guide to NCBI. The Course provided… B asic knowledge and skills for librarians interested in helping patrons use online molecular databases.

Software Sustainability Institute Data Carpentry Aleksandra Pawlik Software Sustainability Institute Data Science Club, 17 th March.

Pathway Informatics 16th August, 2017

Research Paper on BioInformatics

Solutions to Clinical Data Visualization and Analysis

NLM: Meeting Challenges & Seizing Opportunities in & with Big Data

Machine Intelligence & Data Science

The Future of Pharmacogenomic Informatics Gerry Higgins, M.D., Ph.D.

Areas of Research Xia Jiang Associate Professor of

Bioinformatics Training

greasing the wheels of biological big data analysis

Using the Drupal Content Management Software (CMS) as a framework for OMICS/Imaging-based collaboration.

Harry Hochheiser Assistant Professor

NSF Funded Genome2Phenome RCN

Genevieve Morris Principal Deputy National Coordinator for Health IT

NLM Tutorials: PubMed to MyNCBI for Advanced Users

NCBI What is NCBI? PubMed OMIM Blast Entrez and more.

Areas of Research Xia Jiang Assistant Professor

Gail Kaiser, Swapneel Sheth, Chris Murphy

برنامج قواعد البيانات (مايكروسوفت أوفيس اكسس (Microsoft Office Access

Genome organization and Bioinformatics

Pathway Informatics December 5, 2018 Ansuman Chattopadhyay, PhD

Genes to Function to Therapeutics

Biological Databases BI420 – Introduction to Bioinformatics

LESSON 1 INTNRODUCTION HYE-JOO KWON, Ph.D /

TAMU Bovine QTL db and viewer

Data science online training.

Genome Biology & Applied Bioinformatics Mehmet Tevfik DORAK, MD PhD

HUMAN AND SYSTEMS ENGINEERING:

Partnering for Data Science: The Laboratory for Analytic Sciences

MCBIOS 2016 – University of Memphis, TN

AI in Genomics Saed Sayad M.D., Ph.D. Department of Computer Science

Centers of Excellence for Childhood Obesity

Presentation transcript:

Software Prototyping, Training and Networking Data Science in the 21st Century: Streaming Public Data into Containerized Workflows Software Prototyping, Training and Networking Ben Busby, Ph.D. Genomics Outreach Coordinator, Bioinformatics Training Lead NCBI Founder, Department of Bioinformatics and Data Science FAES ben.busby@nih.gov

SNP Calling on the Fly! Polygenic SNP Search Tool https://github.com/NCBI-Hackathons/PSST Show suggestive search..

https://github.com/NCBI-Hackathons/GenomicRobots Show suggestive search..

Antibiotic Resistance Detection! Mention CUNY-SDSU competition!

NCBI Hackathons! Now… with AMR data!

Prokaryotic Genome Annotation

Prokaryotic Genome Annotation

Collaboration! Now… with AMR data!

An automated tool (alpha) Instead of PubMed FTP… An automated tool (alpha) Pubrunner.org

Creating a Community https://biohackathons.github.io MACHINE LEARNING PROJECT MANAGEMENT PRODUCT MANAGEMENT

Translating from Bioinformatics and Clinical Informatics