Increased signal intensity and significant enrichment of transcription factor motifs is observed with DSG in endometrial tissue. Increased signal intensity.

Slides:

Advertisements

Similar presentations

ENCODE enhancers 12/13/2013 Yao Fu Gerstein lab. ‘Supervised’ enhancer prediction Yip et al., Genome Biology (2012) Get enhancer list away to genes DNase.

Advertisements

Checklist for Site Reconnaissance (Sabatini et al_2002)

Behaviorally dependent allele-specific expression.

Analysis of the deep-sequencing data.

Volume 58, Issue 2, Pages (April 2015)

Sequence features that were correlated with ASD.

OTX2 is associated with higher levels of activity when paired with NEUROD1 and arranged in clusters. OTX2 is associated with higher levels of activity.

Characterization of R and VR tumors grafted in mice.

Chromatin binding sites shared by pCREB1 and ERα are predominantly cAMP induced. Chromatin binding sites shared by pCREB1 and ERα are predominantly cAMP.

Expression and occupancy of a set of transcription factors corresponding to the identified motifs at FAIRE peaks Expression and occupancy of a set of transcription.

Presence of motifs correlated with decreased expression of downstream genes. Presence of motifs correlated with decreased expression of downstream genes.

Genome-wide analysis of p53 occupancy.

Generating ChIP-seq profiles from 18G core needle biopsies from radical prostatectomy samples. Generating ChIP-seq profiles from 18G core needle biopsies.

Songjoon Baek, Ido Goldstein, Gordon L. Hager Cell Reports

ChIP-seq analyses in primary endometrial tissue.

DNMT3A variants cause unique DNAm signatures.

Comparison of observed and predicted coverage patterns.

Coverage plots of H3K27ac ChIP-seq data in endometrial cancer specimens. Coverage plots of H3K27ac ChIP-seq data in endometrial cancer specimens. For the.

Functional networks of proteins associated with SL3a, SL3abc, SL123, and D3 transcripts. Functional networks of proteins associated with SL3a, SL3abc,

Supplementary Fig S1, Zembutsu H et al.

Enrichment analysis of differentially methylated CpGs.

1. Identify the tissue.

Overlap between changes in de novo protein synthesis after p53- or miR-34a-induction. Overlap between changes in de novo protein synthesis after p53- or.

Label frequency and average enrichment of taxa.

Disrupted dynamic translational regulation of proneural factor Mash1.

Motif enrichment and codon usage are not correlated.

Treatment with DM-α-KG rescues gene expression in the context of chronic mtDNA depletion. Treatment with DM-α-KG rescues gene expression in the context.

MAGs and testes transcript expression levels in the An. gambiae complex. MAGs and testes transcript expression levels in the An. gambiae complex. (A) Percentage.

Statistical analysis of the effect of Z-FA-FMK on the SMN protein expression in biological triplicates (sample 1, 2, and 3) of SMA fibroblast cells (GM03813).

Stable interactors of Plk1 include phosphorylation-dependent interactions. Stable interactors of Plk1 include phosphorylation-dependent interactions. (A)

Expression profiles of 5,493 transcripts grouped by k-means clustering

TFs and predicted regulatory networks for the tissue- and lineage-dependent clusters 2, 3, and 9. TFs and predicted regulatory networks for the tissue-

Analysis of the nonsynonymous to synonymous substitutions dN/dS (ω) for the 5,493 1:1 ortholog transcripts. Analysis of the nonsynonymous to synonymous.

Correlation of biological variance between patients and tissue types.

Correlation between mass spectrometry–based (MS) variance estimates and TMA homogeneity. Correlation between mass spectrometry–based (MS) variance estimates.

Correlation of DNMT3A expression and its variants with clinical parameters. Correlation of DNMT3A expression and its variants with clinical parameters.

Detection of H3K9ac enrichment peaks during the 9-d timeframe of dox-induced mitDNA depletion by ChIPseq. Detection of H3K9ac enrichment peaks during the.

Increased signal intensity and significant enrichment of transcription factor motifs is observed with DSG in breast tissue. Increased signal intensity.

Increased signal intensity and significant enrichment of transcription factor motifs is observed with DSG in primary prostate tissue. Increased signal.

Coverage plots of H3K27ac ChIP-seq data in breast cancer specimens.

ChIP-seq analyses in primary breast tissue.

Identification of highly variable transcripts.

Chromatin shearing is not affected between the two fixation methods.

ChIP-seq analyses in primary in prostate tissue.

Statistics of cleavage sites and mutant-enriched sites.

No correlation between the distance of the duplicated alleles and the transcription levels on each of the alleles. No correlation between the distance.

Expression of RUNX2 correlates with ER/PR/HER2-negative human breast cancer. Expression of RUNX2 correlates with ER/PR/HER2-negative human breast cancer.

No correlation between the position of the gene in the nuclear volume and the transcription levels on each of the alleles. No correlation between the position.

The RAS-MEK-ERK pathway represents a chain of protein signalling pathway that responds to a mitogen binding to a cell surface receptor. The RAS-MEK-ERK.

Cancer mutations in enriched RBP motifs.

Quantification of TBS-, FA-soluble Aβ40/42, and Aβ oligomers in the brain of adult and aged APP/PSEN1 and APP/PSEN1/APOEnull mice. Quantification of TBS-,

Volume 52, Issue 1, Pages (October 2013)

Related to Fig 6. MS-based proteomic characterization of mdx, ctx, and wt FAPs. related to Fig 6. MS-based proteomic characterization of mdx, ctx, and.

Box plots and scatterplots showing the distribution of miRNA-binding site number difference between the stable and unstable alleles for genes with significant.

Changes in histone acetylation caused by progressive mtDNA depletion occur in specific loci and are robust already at day 3. Changes in histone acetylation.

Variation analysis for differences between transcription levels on the duplicated alleles. Variation analysis for differences between transcription levels.

Comparing drug sensitivity predictions from different data types in melanoma and endometrial cancer cell lines. Comparing drug sensitivity predictions.

Enrichment of 3-aa motifs upon addition of Ery.

Trans-acting factors show enrichment of putative targets among differentially translated genes under DR. Trans-acting factors show enrichment of putative.

Enrichment of miRNAs among DPAR genes and their relative expression under dietary restriction. Enrichment of miRNAs among DPAR genes and their relative.

Coverage plots of H3K27ac ChIP-seq data in prostate cancer specimens.

Analysis of LC8-binding and nonbinding motifs reveals distinct positional preferences. Analysis of LC8-binding and nonbinding motifs reveals distinct positional.

Motif sequence logo and surface analysis of LC8.

Increased signal intensity and significant enrichment of transcription factor motifs is observed with DSG in cell line models. Increased signal intensity.

Enrichment of chromatin marks around differentially methylated CpGs.

Volume 58, Issue 2, Pages (April 2015)

Multiplex Enhancer Interference Reveals Collaborative Control of Gene Regulation by Estrogen Receptor α-Bound Enhancers Julia B. Carleton, Kristofer.

EZH2-driven lung cancer as a molecularly distinct entity.

Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.

Fig. 5 Enhancers and super-enhancers identified in various brain cell populations. Enhancers and super-enhancers identified in various brain cell populations.

Presentation transcript:

Increased signal intensity and significant enrichment of transcription factor motifs is observed with DSG in endometrial tissue. Increased signal intensity and significant enrichment of transcription factor motifs is observed with DSG in endometrial tissue. (A) Distribution of ER motifs around ER binding sites in endometrium tissue (n = 3). (B) Scatterplot depicts the correlation of reads between the binding sites identified using FA and FA along with DSG (FA+DSG) for ER and H3K27ac in endometrium tissue (n = 3). Abhishek A Singh et al. LSA 2019;2:e201800115 © 2018 Singh et al.