Rooted neighbor-joining tree inferred from the concatenated MLST typing scheme sequences (CAP59, GPD1, LAC1, SOD1, URA5, and PLB1 genes and IGS) of 10.

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Phylogenetics and Coalescence Lab 9 October 24, 2012.

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Presentation transcript:

Rooted neighbor-joining tree inferred from the concatenated MLST typing scheme sequences (CAP59, GPD1, LAC1, SOD1, URA5, and PLB1 genes and IGS) of 10 strains of each major C. gattii molecular type rooted with the standard strains of the three major C. neoformans molecular types. Rooted neighbor-joining tree inferred from the concatenated MLST typing scheme sequences (CAP59, GPD1, LAC1, SOD1, URA5, and PLB1 genes and IGS) of 10 strains of each major C. gattii molecular type rooted with the standard strains of the three major C. neoformans molecular types. Numbers on branches are bootstrap support values obtained from 1,000 pseudoreplicates using the program MEGA version 5.05. Numbers in the white boxes indicate estimated diversion times based on the 10 genetic concatenated loci (ACT1, LAC1, IDE1, ITS1/2, IGS, PLB1, RPB1, RPB2, TEF1, and URA5), generated with the program BEAST. Sharon C.-A. Chen et al. Clin. Microbiol. Rev. 2014; doi:10.1128/CMR.00126-13