Bray-Curtis beta diversity analysis of Kaneohe Bay (KB) ANG and JC bacterial communities. Bray-Curtis beta diversity analysis of Kaneohe Bay (KB) ANG and.

Slides:

Advertisements

Similar presentations

Mean for sample of n=10 n = 10: t = 1.361df = 9Critical value = Conclusion: accept the null hypothesis; no difference between this sample.

Advertisements

1 Confidence Intervals for Means. 2 When the sample size n< 30 case1-1. the underlying distribution is normal with known variance case1-2. the underlying.

Normal Distribution.

Box and Whisker Plots Example: Comparing two samples.

A non-endoscopic device to sample the oesophageal microbiota: a case-control study Daffolyn R Fels Elliott, MD, Alan W Walker, PhD, Maria O'Donovan, MD,

Developing the Sampling Plan

Nonmetric multidimensional scaling (NMDS) ordination of variation in bacterial community structure of tree phyllosphere along a gradient of urban intensity.

Multivariate community analysis

Long-chain fatty acids are less abundant in the cecal contents of coconut oil-fed mice than in the cecal contents of beef tallow-fed mice. Long-chain fatty.

Volume 21, Issue 13, Pages (December 2017)

فرایند تسهیلگری در مددکاری جامعه ای

Taxonomic composition of subway microbial communities.

Exploration of the data set with age as a continuous variable.

Microbial community dissimilarity.

Changes in archaeal diversity during great ape diversification.

Microbial diversity was broadly compared across three unique built-environment study sites for 16S rRNA amplicon and shotgun metagenome sequencing. Microbial.

Volume 11, Issue 4, Pages (April 2015)

Volume 21, Issue 13, Pages (December 2017)

Genus-level genomic OTU (gOTU) richness.

Multi-step Inequalities

Sampling results 5 (10%) 74% 10 (20%) 25 (50%) 45 (90%) Sample Size

Cell sorting scheme and its impact on bacterial diversity of the samples. Cell sorting scheme and its impact on bacterial diversity of the samples. (A)

Microbial diversity of the 10 body locations sampled.

Ions representative of bronchial tissue (m/z 88

Nonmetric multidimensional scaling (NMDS) plots of fecal and biopsy sample-based Bray-Curtis distances computed from the relative abundances of the 258.

The airway microbiome in patients with severe asthma: Associations with disease features and severity Yvonne J. Huang, MD, Snehal Nariya, BS, Jeffrey.

Null modeling approach for quantifying influences of assembly processes and connecting those processes to biogeochemical function. Null modeling approach.

Comparison of microbial communities in adult and children visitors and villagers. Comparison of microbial communities in adult and children visitors and.

Individual genes exhibit distinct stage-specific expression among female gametocytes. Individual genes exhibit distinct stage-specific expression among.

Individual genes exhibit distinct female-enriched expression patterns.

Pearson correlation of gene expression identifies distinct groups of male- and female-enriched genes. Pearson correlation of gene expression identifies.

The Inuit microbiome has a community composition similar to that of the Western microbiome. The Inuit microbiome has a community composition similar to.

Volume 14, Issue 6, Pages (December 2013)

C.2.10 Sample Questions.

Microbial community structure analysis.

C.2.8 Sample Questions.

Gene expression separates male and female single gametocytes into distinct populations. Gene expression separates male and female single gametocytes into.

Study design and taxonomic composition of vaginal fluid metatranscriptomes in BV during and after treatment with metronidazole. Study design and taxonomic.

C.2.8 Sample Questions.

Compositional PCA plot of samples (A) and OTU loadings (B) for the initial data set. Compositional PCA plot of samples (A) and OTU loadings (B) for the.

RNA-Seq analysis of CYR1 cells in the adaptation to acid pH.

Rectangle, x = 100, y = 200 Ellipse, x = 200, y = 300 #1.

Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.

(A) Taxonomic identity at the phylum level of raw leachate (RL) and enrichment microcosms (E) as determined via Ion Torrent 16S rRNA gene amplicon sequencing.

Shifts in the microbial community compositions of the control and antibiotic groups. Shifts in the microbial community compositions of the control and.

TEM observation of the bacterial damage caused by egg white.

Zachary L. Steinberg et al. JACC 2017;69:

Comparison of levels of microbiome diversity by BMI, stratified by geography. Comparison of levels of microbiome diversity by BMI, stratified by geography.

Impact of medical data on bacterial diversity of fractionated samples.

Spearman’s correlation analysis of microbiota and NMR spectra of the control and ciprofloxacin groups (A, C) or the vancomycin-imipenem group (B, D) after.

Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.

Taxonomic composition over time was determined by (A) metagenomic sequencing and (B) qualitative culturomics. Taxonomic composition over time was determined.

Dominant bacterial phyla found in different stages.

PCoA plots of subgingival samples with disease classification overlaid

Comparison of community fungal and bacterial/archaeal diversity levels

Procrustes analysis comparing the spatial fit of unweighted UniFrac principal-coordinate matrices of bacterial communities (yellow spheres) and Bray-Curtis.

ICU stays result in drastic community changes.

Beta-diversity analyses of microbial taxa recovered from ATM keypads.

Shannon rarefaction analysis.

Bipartite co-occurrence networks were generated in CoNet and visualized in Cytoscape to display significant strong positive and negative co-occurring relationships.

Distribution of selected traits across the >4,000 strains in the most recent version of the database, including cell shape (A), spore formation (B), motility.

Relative proportions of taxa and UPGMA hierarchical clustering of the mock communities. Relative proportions of taxa and UPGMA hierarchical clustering.

Acarbose reversibly changes the structure of the murine gut community.

In silico coverage across fungal phyla.

Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.

Variations in beta and alpha diversity of gut microbiome eukaryotic communities explained by presence of Blastocystis. Variations in beta and alpha diversity.

Alpha diversity analysis of Kaneohe Bay ANG and JC bacterial communities. Alpha diversity analysis of Kaneohe Bay ANG and JC bacterial communities. Two-way.

Northern shovelers may have unique microbiome differences with respect to IAV infection, relative to the other duck species. Northern shovelers may have.

Fig. 3 Postnatal assembly of the humanized gut microbiota.

Presentation transcript:

Bray-Curtis beta diversity analysis of Kaneohe Bay (KB) ANG and JC bacterial communities. Bray-Curtis beta diversity analysis of Kaneohe Bay (KB) ANG and JC bacterial communities. (A) The overall community composition of KB and Maunalua Bay (MB) ANGs and JCs overlapped, but the KB samples had lower dispersion and clustered apart from the MB samples. (B) ANG and JC bacterial community compositions were not distinct in Kaneohe Bay. (C) KB ANG and JC samples clustered by associated female. Ellipses represent 95% confidence intervals. Results of ANOSIM are presented in parentheses in each plot. Allison H. Kerwin, and Spencer V. Nyholm mSphere 2018; doi:10.1128/mSphere.00531-17