Microbial differences found between TPC- and PBS-treated mice with lupus. Microbial differences found between TPC- and PBS-treated mice with lupus. (A)

Slides:



Advertisements
Similar presentations
Nonmetric multidimensional scaling (NMDS) ordination of variation in bacterial community structure of tree phyllosphere along a gradient of urban intensity.
Advertisements

16S rRNA gene abundance and total gene expression of Tannerella species in healthy patient and periodontitis patient samples. 16S rRNA gene abundance and.
Taxonomic composition of subway microbial communities.
Fig. 4 Bacterial taxonomic groups that discriminate among RYGB-, SHAM-, and WMS-derived samples. Bacterial taxonomic groups that discriminate among RYGB-,
Composition of microbial communities in induced sputa of healthy and mild, moderate, severe or very severe (end-stage) lung disease affected individuals.
Relative abundances of the top 10 most abundant OTUs across all fish samples are shown along with the data from the probiotic B. pumilus RI06-95 (OTU 3673)
Nitrate-, nitrite-, and nitric oxide-reducing bacteria.
The butyrate-producing community during disturbance.
A1 A2 B1 B2 C1 C2 C3 C4 Figure S1. Comparison of percentage relative abundances of polyamines taking country (A1) and mode of delivery (A2) as factors.
Differential abundance of bacterial families.
Gut microbial diversity of mice in voluntary and forced exercise groups. Gut microbial diversity of mice in voluntary and forced exercise groups. Weighted.
Microbial diversity of the 10 body locations sampled.
Voluntary but not forced exercise alters food consumption in mice.
Titration of antibiotic perturbations results in altered community structures and C. difficile colonization resistance. Titration of antibiotic perturbations.
Volume 10, Issue 11, Pages (March 2015)
Putative MBTA microbial community sources.
Taxonomic composition of the baboon and human gut microbiota.
Bacteroidetes bacteria are the main contributors to LPS biosynthesis in the human gut microbiome. Bacteroidetes bacteria are the main contributors to LPS.
Correlation of mouse gene expression with bacterial gene expression.
Differences in microbiome between control and BPA-exposed rabbit offspring and dams according to linear discriminant analysis effect size (LEfSe). Differences.
Performance of FDR methods on filtered microbiome data.
Visualization of a global auxin‐response gradient in the root meristem
The NLR Protein NLRP6 Does Not Impact Gut Microbiota Composition
Population characteristics.
Family level bar plots generated in QIIME 1. 9
miRNA target pathways correlated with CRC-associated bacteria.
Structure of benthic microbial communities of residential and industrial land use types before and after two rain events in urban waterways are shown.
Heatmaps of differential OTUs
Bacteria significantly correlated with DE miRNAs.
Relative abundances (percent) of genes that code for key enzymes involved in direct and indirect butyrate production during glucose fermentation at different.
Characterization of differentially expressed proteins based on their COG classification. Characterization of differentially expressed proteins based on.
The similar shifts of gut microbiota in IBD across cohorts.
Enterotypes of the distal gut microbial profiles.
PICRUSt analysis results of predicted functional pathways in the gut microbiota. PICRUSt analysis results of predicted functional pathways in the gut microbiota.
Relative abundances of Akkermansia muciniphila organisms in all mouse groups. Relative abundances of Akkermansia muciniphila organisms in all mouse groups.
Canonical correspondence analysis (CCA) showing the correlations among soil edaphic factors and microbial communities from each sample type. Canonical.
Effects of FMT in sows and/or offspring on median relative abundances (%) of bacterial phyla (A and B) and genera (C and D) in offspring fecal samples.
Aboveground and belowground samples showed differences in their bacterial community structures and compositions, while bulk soil and root communities differed.
Metabolite predictability is consistent between vaginal and mouse cecal data sets. Metabolite predictability is consistent between vaginal and mouse cecal.
RNA abundance correlates with fitness.
Exploration of gut and skin microbiome of the habitat switching experiment with Calour. Exploration of gut and skin microbiome of the habitat switching.
Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.
Gut microbiota components influenced by AXOS intake.
Taxonomy assessment of metagenes with differential abundance as a result of the AXOS intervention. Taxonomy assessment of metagenes with differential abundance.
Differentially abundant OTUs and higher taxonomic units across geography and diet. Differentially abundant OTUs and higher taxonomic units across geography.
Microbial communities of the differently treated mice with lupus cluster separately after treatment. Microbial communities of the differently treated mice.
Analysis of renal transcriptome responses identifies LX-regulated transcriptional networks. Analysis of renal transcriptome responses identifies LX-regulated.
Differences in Verrucomicrobia genera across plant community types.
Association of specific phylotypes with walnut consumption and carcinogen exposure (Study 2). Association of specific phylotypes with walnut consumption.
Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;
OTU and family-level changes in murine gut as a result of acarbose feeding on a high-starch diet. OTU and family-level changes in murine gut as a result.
Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.
CXCL14-positive CAFs induce overexpression of LINC00092 in ovarian cancer. CXCL14-positive CAFs induce overexpression of LINC00092 in ovarian cancer. A,
LEfSe comparison analysis between the control and ciprofloxacin or vancomycin-imipenem groups at the end of antibiotic treatment (A or B, respectively)
Relative abundance of the predicted KEGG orthologous groups (KOs) in the fecal (A) and salivary (B) samples from the clindamycin group plotted against.
LAIV enhances bacterial load and duration of staphylococcal carriage.
LAIV enhancement of pneumococcal density is time dependent and long lasting. LAIV enhancement of pneumococcal density is time dependent and long lasting.
Untargeted LC/MS metabolite profiling of DFMO-treated HT-29 colorectal cancer cells. Untargeted LC/MS metabolite profiling of DFMO-treated HT-29 colorectal.
Hierarchically clustered heat map showing correlations between the relative abundances of microbial species and the levels of volatile compounds in kefir.
Acarbose reversibly changes the structure of the murine gut community.
Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.
Variations in beta and alpha diversity of gut microbiome eukaryotic communities explained by presence of Blastocystis. Variations in beta and alpha diversity.
Transcriptomic Analysis of GmSIN1 OE-1 Transgenic Soybean.
Integrated analysis of gene expression and copy number alterations.
Pathway-based analysis of the differentially expressed proteins in colonic mucosa. Pathway-based analysis of the differentially expressed proteins in colonic.
Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.
Association between genome size and the dN/dS ratio for archaeal (A; n = 21) and bacterial (B; n = 28) genome pairs and association between coding density.
Relative abundance and expression of the 10 most abundant MAGs in the bioreactor at day 96. Relative abundance and expression of the 10 most abundant MAGs.
Fig. 3 Gene expression analysis in 48-plex drug treatment experiments.
Relative abundances of bacterial/archaeal groups in 16S rRNA data set.
Presentation transcript:

Microbial differences found between TPC- and PBS-treated mice with lupus. Microbial differences found between TPC- and PBS-treated mice with lupus. (A) Bar chart of significant differences in gut bacterial abundances between TPC- and PBS-treated mice with lupus at day 35 based on LEfSe analysis. (B) Heatmap of differential features correlated with protein levels in TPC- versus PBS-treated mice with lupus at day 35, generated using Calour. Bacteria were selected using Pearson's correlation with a dsFDR of 0.05 multiple hypothesis correction. Top color bars (TPC/PBS) indicate the different treatments. Side color bar indicates relative reads out of 10,000 (following normalization of each sample to 10,000 reads). (C) Bar chart of significant differences in predicted gut bacterial function between TPC- and PBS-treated mice with lupus at day 35 based on PICRUSt analysis. Hadar Neuman et al. mSystems 2019; doi:10.1128/mSystems.00160-18