(A and B) Unweighted (A) and weighted (B) UniFrac clustering of three 16S rRNA hypervariable regions using fragment insertion SATé-enabled phylogenetic.

Slides:

Advertisements

Similar presentations

Clostridium difficile Colitis or Dysbiosis. Symbiostasis/Dysbiosis.

Advertisements

Kruskal Wallis H test Use when a nonparametric test is needed. When you have one variable but more than two groups. Equivalent to a one way ANOVA.

A non-endoscopic device to sample the oesophageal microbiota: a case-control study Daffolyn R Fels Elliott, MD, Alan W Walker, PhD, Maria O'Donovan, MD,

16S rRNA gene abundance and total gene expression of Tannerella species in healthy patient and periodontitis patient samples. 16S rRNA gene abundance and.

Inflammatory phenotypes in patients with severe asthma are associated with distinct airway microbiology Steven L. Taylor, BSc, Lex E.X. Leong, PhD, Jocelyn.

Volume 23, Issue 10, Pages (June 2018)

Microbial community dissimilarity.

Volume 14, Issue 9, Pages (March 2016)

MFS1 expression in IPO323 MFS1 replacement mutants.

Microbial diversity was broadly compared across three unique built-environment study sites for 16S rRNA amplicon and shotgun metagenome sequencing. Microbial.

Dysbiosis of gut microbiota patterns in Chinese patients with IBD

Longitudinal Evaluation of the Skin Microbiome and Association with Microenvironment and Treatment in Canine Atopic Dermatitis Charles W. Bradley, Daniel.

Chapter 16 Nonparametric Statistics.

MFS1 expression in parental and progeny strains.

Alterations in the Gut Microbiota Associated with HIV-1 Infection

Intervention effects on taxonomic and functional pathway diversity of the intestinal microbiome. Intervention effects on taxonomic and functional pathway.

Lower airway microbiota and mycobiota in children with severe asthma

MFS1 expression in Z. tritici field isolates with different promoter genotypes. MFS1 expression in Z. tritici field isolates with different promoter genotypes.

Bacterial biomarkers associated with disease severity.

Gut microbial diversity of mice in voluntary and forced exercise groups. Gut microbial diversity of mice in voluntary and forced exercise groups. Weighted.

Microbial diversity of the 10 body locations sampled.

Optimized KatharoSeq protocol applied to a JPL cleanroom facility.

Putative MBTA microbial community sources.

Skin Microbiome Surveys Are Strongly Influenced by Experimental Design

Taxonomic composition of the baboon and human gut microbiota.

Succession of the butyrate-producing community after birth.

C. Kampmann, J. Dicksved, L. Engstrand, H. Rautelin

Differences in microbiome between control and BPA-exposed rabbit offspring and dams according to linear discriminant analysis effect size (LEfSe). Differences.

Performance of FDR methods on filtered microbiome data.

Comparison of microbial communities in adult and children visitors and villagers. Comparison of microbial communities in adult and children visitors and.

Population characteristics.

Relative abundance of proteins identified in MALDI IMS

Unweighted UniFrac PCoA plots.

Bacteria significantly correlated with DE miRNAs.

Bacterial community dissimilarity, as measured by weighted UniFrac, a quantitative measurement (a), and unweighted UniFrac, a qualitative measurement (b),

Enterotypes of the distal gut microbial profiles.

Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.

PICRUSt analysis results of predicted functional pathways in the gut microbiota. PICRUSt analysis results of predicted functional pathways in the gut microbiota.

Relative abundances of Akkermansia muciniphila organisms in all mouse groups. Relative abundances of Akkermansia muciniphila organisms in all mouse groups.

Proportion of 16S rRNA gene sequences in each category of phylogenetic novelty relative to cultures for each environment, by amplicons, metagenomes (without.

Figure 2 Overall community differences in the gut microbiota of treated or untreated patients with MS Overall community differences in the gut microbiota.

(A) Box-and-whisker plots illustrate the median, maximum, minimum, and first and third quartiles of the distribution of the number of observed OTUs and.

Belowground microbiome community responses.

Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.

Gut microbiota components influenced by AXOS intake.

Comparison of taxonomic differences between stool microbiota from healthy patients and stool microbiota from ICU patients and stool from healthy patients.

mtDNA genotypes correlate with gut microbiota composition.

A principal-coordinate analysis plot of UniFrac distances from Deblur as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.

The ND6P25L mtDNA mutation reduces gut microbiota diversity in C57BL/6J mice. The ND6P25L mtDNA mutation reduces gut microbiota diversity in C57BL/6J mice.

Sequence variation of 16S rRNA gene primer-binding sites.

A principal-coordinate analysis plot of UniFrac distances from UNOISE2 as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.

Phylogenetic diversity (PD) by signiﬁcant market integration factors, house modernity (A), power usage (B), and house modernity and power usage (C). Phylogenetic.

Comparison of the original 515f/806r primer pair and the new, modified 515f/806rB primer pair. Comparison of the original 515f/806r primer pair and the.

The Diversity of Gut Microbiome is Associated With Favorable Responses to Anti– Programmed Death 1 Immunotherapy in Chinese Patients With NSCLC Yueping.

Comparison of gut microbiota alpha diversity in different preservatives based on 16S rRNA gene V3-V4 amplicon sequencing. Comparison of gut microbiota.

Dynamic changes in the levels of sex hormones (panel A for LH and panel B for LH/FSH), brain-gut mediators (panel C for ghrelin and panel D for PYY), and.

by Peter J. Turnbaugh, Vanessa K. Ridaura, Jeremiah J

PCoA plots of subgingival samples with disease classification overlaid

V. Lazarevic, S. Manzano, N. Gaïa, M. Girard, K. Whiteson, J. Hibbs, P

ICU stays result in drastic community changes.

Beta-diversity analyses of microbial taxa recovered from ATM keypads.

Normalized abundance of tetracycline resistance genes in Swedish infants by AMR++. Normalized abundance of tetracycline resistance genes in Swedish infants.

Activation status of CD8+ T cells.

(A) Principal component analysis plot of weighted UniFrac distances of microbiota composition at baseline, week 2 and week 8 and donors. (A) Principal.

Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.

Variations in beta and alpha diversity of gut microbiome eukaryotic communities explained by presence of Blastocystis. Variations in beta and alpha diversity.

Median unweighted UniFrac distances between three dolphin habitats: Shedd, MMP, and Sarasota. Median unweighted UniFrac distances between three dolphin.

Comparison of distal gut microbiota composition between Egyptian and U

Higher sub-OTU resolution, in combination with SEPP phylogenies, exposed relevant ecological signals. Higher sub-OTU resolution, in combination with SEPP.

Infant skin and oral mycobiomes by birth mode.

Presentation transcript:

(A and B) Unweighted (A) and weighted (B) UniFrac clustering of three 16S rRNA hypervariable regions using fragment insertion SATé-enabled phylogenetic placement (SEPP) technique. (A and B) Unweighted (A) and weighted (B) UniFrac clustering of three 16S rRNA hypervariable regions using fragment insertion SATé-enabled phylogenetic placement (SEPP) technique. (C) Box plot of the Shannon diversity indices between 16S rRNA V1-V2, V3-V4, and V4 regions. Statistical significance was calculated using Kruskal-Wallis test. (D) Relative abundances (at the order level) of gut microbiota showing statistically significant differences between 16S rRNA V1-V2, V3-V4, and V4 regions. Taxa in red show statistical significance according to nonparametric Wilcoxon signed-rank test (P < 0.05) (see details in Table S4). Zigui Chen et al. mSystems 2019; doi:10.1128/mSystems.00271-18