Transcriptional Scaffolds for Heterochromatin Assembly

Slides:



Advertisements
Similar presentations
Advantages of C. elegans: 1. rapid life cycle 2. hermaphrodite
Advertisements

RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production.
Epigenetics: RNAi and Heterochromatin formation
Atta ur Rahman school of biological Science National University of Sciences & Technology CMB-234:Molecular Biology.
I Virus e l’RNAi approfondimenti.
The plant Mediator and its role in noncoding RNA production
Regulation of Gene Expression
Stress Signaling Etches Heritable Marks on Chromatin
Approaching TERRA Firma: Genomic Functions of Telomeric Noncoding RNA
Volume 49, Issue 1, Pages 3-5 (January 2013)
Jason D. Lieb, Neil D. Clarke  Cell 
The First High-Resolution DNA “Methylome”
Volume 128, Issue 3, Pages (February 2007)
Knocking out the Argonautes
Anna Kloc, Mikel Zaratiegui, Elphege Nora, Rob Martienssen 
Dale Dorsett, Lena Ström  Current Biology 
Coordinate Transcriptional Regulation by ERG and Androgen Receptor in Fusion- Positive Prostate Cancers  Yu Chen, Charles L. Sawyers  Cancer Cell  Volume.
Nuclear Noncoding RNAs and Genome Stability
Chromatin Proteins Do Double Duty
PAF Makes It EZ(H2) for β-Catenin Transactivation
Chromatin: A Tail of Repression
Volume 133, Issue 1, Pages (April 2008)
Volume 175, Issue 1, Pages 6-9 (September 2018)
The Role of the RNAi Machinery in Heterochromatin Formation
Ruchi Jain, Nahid Iglesias, Danesh Moazed  Molecular Cell 
Control of the Embryonic Stem Cell State
Small Molecules, Big Effects: A Role for Chromatin-Localized Metabolite Biosynthesis in Gene Regulation  Bryan A. Gibson, W. Lee Kraus  Molecular Cell 
The Chromatin Signaling Pathway: Diverse Mechanisms of Recruitment of Histone- Modifying Enzymes and Varied Biological Outcomes  Edwin Smith, Ali Shilatifard 
Beyond the Sequence: Cellular Organization of Genome Function
Patrick Trojer, Danny Reinberg  Molecular Cell 
Proteins Kinases: Chromatin-Associated Enzymes?
Easy Stress Relief by EZH2
Martin Zofall, Shiv I.S. Grewal  Molecular Cell 
SiRNA-Mediated Heterochromatin Establishment Requires HP1 and Is Associated with Antisense Transcription  Tetsushi Iida, Jun-ichi Nakayama, Danesh Moazed 
Xin Huang, Jianlong Wang  Molecular Cell 
Destabilizing Heterochromatin: Does Swi6/HP1 Make the Choice?
The Language of Histone Crosstalk
The DUBle Life of Polycomb Complexes
Genome Regulation by Polycomb and Trithorax Proteins
Volume 41, Issue 1, Pages (January 2011)
Crosstalk among Histone Modifications
Aire, Master of Many Trades
Volume 20, Issue 2, Pages (October 2005)
CAMTA in Cardiac Hypertrophy
“Transflammation”: When Innate Immunity Meets Induced Pluripotency
The Impressionistic Landscape of Meiotic Recombination
Long Noncoding RNAs in Cell-Fate Programming and Reprogramming
Functional and Mechanistic Diversity of Distal Transcription Enhancers
Volume 128, Issue 3, Pages (February 2007)
Retrovirus Silencing by an Epigenetic TRIM
Pok Kwan Yang, Mitzi I. Kuroda  Cell 
Origins and Mechanisms of miRNAs and siRNAs
Erica L. Gerace, Mario Halic, Danesh Moazed  Molecular Cell 
Junko Kanoh, Mahito Sadaie, Takeshi Urano, Fuyuki Ishikawa 
Teeing Up Transcription on CpG Islands
Poised RNA Polymerase II Gives Pause for Thought
Small RNAs as Guardians of the Genome
Transcriptional Regulation and Its Misregulation in Disease
Polycomb Group Proteins Set the Stage for Early Lineage Commitment
Epigenetics in Alternative Pre-mRNA Splicing
Chromatin Modifications and Their Function
NuRD and Pluripotency: A Complex Balancing Act
Marc Bühler, André Verdel, Danesh Moazed  Cell 
Dynamic Integration of Splicing within Gene Regulatory Pathways
A New Cohesive Team to Mediate DNA Looping
Epigenome Sequencing Comes of Age
Chromatin Silencing: RNA in the Driving Seat
DegrAAAded into Silence
Transcriptional Repression: Conserved and Evolved Features
Histone Lysine Demethylases and Their Impact on Epigenetics
Presentation transcript:

Transcriptional Scaffolds for Heterochromatin Assembly Hugh P. Cam, Ee Sin Chen, Shiv I.S. Grewal  Cell  Volume 136, Issue 4, Pages 610-614 (February 2009) DOI: 10.1016/j.cell.2009.02.004 Copyright © 2009 Elsevier Inc. Terms and Conditions

Figure 1 Transcription and Heterochromatin Formation Heterochromatin assembly in fission yeast requires coordinated function of histone-modifying enzymes (ClrC and histone deacetylases), HP1 proteins (Chp2 and Swi6), and the RNA interference (RNAi) machinery. RNAi factors include the Dicer enzyme (Dcr1), the RNA-induced transcriptional silencing (RITS) complex, and the RNA-dependent RNA polymerase complex (RDRC) that process centromeric repeat transcripts into siRNAs. (Top) During S phase of the cell cycle, the relatively open heterochromatic structure permits heightened RNA Pol II activity at centromeric repeats. This, in turn, stimulates the recruitment of heterochromatin-assembly factors such as the ClrC subunit Rik1 and the RITS subunit Argonaute 1 (Ago1), as well as histone H3 lysine 36 methylation by the Set2 methyltransferase implicated in the recruitment of the histone deacetylase (HDAC) silencing complexes such as Clr6 (Chen et al., 2008). Interaction between ClrC and RITS stabilizes their binding to chromatin and facilitates the processing of centromeric repeat RNAs to siRNAs (Zhang et al., 2008). Recruitment of ClrC may also be mediated by downstream siRNA products such as double-stranded RNAs. Methylation of lysine 9 on histone H3 (H3K9me) by the Clr4 subunit of ClrC not only recruits HP1 proteins but also establishes a positive feedback loop by stabilizing the chromatin association of ClrC (via Clr4 chromodomain) and RNAi components such as RITS (via Chp1 chromodomain). (Bottom) In G2 phase, HP1 proteins bound to H3K9me not only recruit silencing factors such as the HDAC complex SHREC but also an antisilencing factor Epe1 that promotes Pol II transcription. Spreading of HP1 proteins and H3K9me from the original nucleation sites allows heterochromatin to serve as a versatile recruiting platform for factors involved in diverse chromosomal processes. These include RNAi machinery that mediates posttranscriptional silencing in cis (cis-PTGS), HDACs involved in transcriptional gene silencing (TGS), and factors that are essential for genome stability. Cell 2009 136, 610-614DOI: (10.1016/j.cell.2009.02.004) Copyright © 2009 Elsevier Inc. Terms and Conditions