Core 5: Training Randy Gollub, MD PhD Guido Gerig, PhD

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Presentation transcript:

Core 5: Training Randy Gollub, MD PhD Guido Gerig, PhD Martha Shenton, PhD Greg Jones, PhD Ross Whitaker, PhD Sonia Pujol, PhD http://na-mic.org

Goals for this meeting Present our plans for the year Present progress on initial fMRI data analysis tutorial Identify key areas of fundamental knowledge of image acquisition and analysis for DTI data Identify topics for future efforts (e.g. structural MR, DTI atlases)

Goals for the year Complete fMRI data analysis tutorial Develop new tutorials for image acquisition and analysis for DTI data

DTI Acquisition and Analysis Module Planned Schedule fMRI Module Development and tests DTI Acquisition and Analysis Module Specifications DTI Module Design and tests Jan Feb Mar Apr May Jun July Aug Sep Oct Nov Dec

DTI Acquisition and Analysis Module Planned Schedule fMRI Module Development and tests DTI Acquisition and Analysis Module Specifications DTI Module Design and tests Jan Feb Mar Apr May Jun July Aug Sep Oct Nov Dec

fMRI Data Analysis Module Design features Platform independent, Web based Didactic text to lead learner Pre-computed image data Client/server architecture Rapid interaction

fMRI Module: Content Temporal/Spatial Correlation Statistical Modeling Noise: Sources Motion Correction and Spatial Filtering Uses inert phantom, resting and experimental human imaging data

fMRI: Didactic

fMRI: Application

fMRI: Statistical Analysis Tool Module I Spatial Filtering

fMRI: Statistical Analysis Tool Module II Motion Correction

fMRI: Statistical Analysis Tool Module III Statistical Modeling

fMRI: Statistical Analysis Tool Results

Next Steps Complete fMRI software engineering Design usability test: interactions with Core 3 Study harmonization with Slicer fMRI module May 2005

Slicer3D fMRI Engine H. Liu, W. Plesniak, S. Pieper, W. Wells, C. Wible

DTI Acquisition and Analysis Module Planned Schedule fMRI Module Development and tests DTI Acquisition and Analysis Module Specifications DTI Module Design and tests Jan Feb Mar Apr May Jun July Aug Sep Oct Nov Dec

DTI Acquisition and Analysis Module Planned Schedule fMRI Module Development and tests DTI Acquisition and Analysis Module Specifications DTI Module Design and tests Jan Feb Mar Apr May Jun July Aug Sep Oct Nov Dec

DTI Modules: Content Core 1 Core 3 NAMIC DTI Workshop Tomorrow’s Discussions Image Acquisition Data Representation Analysis steps Visualization

DTI Modules: Content Core 1 UNC G. Gerig http://www.ia.unc.edu/dev/tutorials/FiberViewer/index.htm

DTI in Slicer Core 1 LMI/MIT/BWH http://www.na-mic.org/Wiki/index.php/Slicer:DTMRI Lauren O’Donnell

DTI Module: Documentation

DTI Acquisition and Analysis Module Planned Schedule fMRI Module Development and tests DTI Acquisition and Analysis Module Specifications DTI Module Design and tests Jan Feb Mar Apr May Jun July Aug Sep Oct Nov Dec