Fig. 4 CEBPA-p30 mediated activation of Nt5e expression.

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Fig. 5 Correlation of RNA expression and protein abundance.

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Fig. 4 CEBPA-p30 mediated activation of Nt5e expression. CEBPA-p30 mediated activation of Nt5e expression. (A) RT-qPCR quantification of Nt5e expression normalized to Actg1 (WT GMPs, n = 3; Lp30 L-GMPs, n = 4; mean ± SD, t test). (B) CD73 expression on the surface of WT GMPs and Lp30 L-GMPs as determined by flow cytometry (left) and the associated quantification CD73 expression GMPs (right; WT GMPs, n = 2; Lp30 L-GMPs, n = 3; mean ± SD, t test). (C) Top: ChIP-seq analysis on WT GMPs and Lp30 L-GMPs, showing a putative p30-specific enhancer located 40 kb upstream of the murine Nt5e gene. Middle: Assessment of direct interaction between the −40-kb enhancer and the Nt5e TSS by 3C-qPCR. Primer localization is depicted by open circles. qPCR (n = 3 to 5) was normalized to cKit–enriched BM cells (multiple t test, Holm-Sidak). Bottom: CRISPRi-mediated knockdown of Nt5e in Lp30 L-GMPs using gRNAs targeting the positions indicated by open circles. Nt5e expression was quantified by RT-qPCR, and expression levels were normalized to Actg1 and to cells transduced with gRNA targeting position −112 kb [n = 3, mean ± SD, one-way analysis of variance (ANOVA) with Dunnett’s correction, testing expression reductions between targeting enhancer or TSS positions versus the −112-kb control position]. (D) Dual luciferase assay assessing p42- or p30-mediated trans-activation of the −40-kb enhancer cloned upstream of a minimal promoter compared to an empty vector control (n = 3, mean ± SEM, t test). For all panels, *P ≤ 0.05; **P ≤ 0.01; ***P ≤ 0.001; ****P ≤ 0.0001. Janus S. Jakobsen et al. Sci Adv 2019;5:eaaw4304 Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).