Computed Tomography.

Slides:



Advertisements
Similar presentations
Principles of CT.
Advertisements

Computer Vision Lecture 7: The Fourier Transform
8.3 Inverse Linear Transformations
Principal Component Analysis Based on L1-Norm Maximization Nojun Kwak IEEE Transactions on Pattern Analysis and Machine Intelligence, 2008.
Linear Algebra Applications in Matlab ME 303. Special Characters and Matlab Functions.
Image Reconstruction T , Biomedical Image Analysis Seminar Presentation Seppo Mattila & Mika Pollari.
IPIM, IST, José Bioucas, X-Ray Computed Tomography Radon Transform Fourier Slice Theorem Backprojection Operator Filtered Backprojection (FBP) Algorithm.
Linear Transformations
BMME 560 & BME 590I Medical Imaging: X-ray, CT, and Nuclear Methods Tomography Part 4.
Last Time Pinhole camera model, projection
Project Overview Reconstruction in Diffracted Ultrasound Tomography Tali Meiri & Tali Saul Supervised by: Dr. Michael Zibulevsky Dr. Haim Azhari Alexander.
Motion Analysis (contd.) Slides are from RPI Registration Class.
CSci 6971: Image Registration Lecture 4: First Examples January 23, 2004 Prof. Chuck Stewart, RPI Dr. Luis Ibanez, Kitware Prof. Chuck Stewart, RPI Dr.
Real-time Combined 2D+3D Active Appearance Models Jing Xiao, Simon Baker,Iain Matthew, and Takeo Kanade CVPR 2004 Presented by Pat Chan 23/11/2004.
The plan for today Camera matrix
1 Image filtering Images by Pawan SinhaPawan Sinha.
6 1 Linear Transformations. 6 2 Hopfield Network Questions.
Algebraic and Statistic Reconstruction Algorithms Liran Levy Advanced Topics in Sampling (049029), Winter 2008/9.
September 25, 2014Computer Vision Lecture 6: Spatial Filtering 1 Computing Object Orientation We compute the orientation of an object as the orientation.
10.1 Gaussian Elimination Method
Application of Digital Signal Processing in Computed tomography (CT)
Systems and Matrices (Chapter5)
WP3 - 3D reprojection Goal: reproject 2D ball positions from both cameras into 3D space Inputs: – 2D ball positions estimated by WP2 – 2D table positions.
Row Reduction Method Lesson 6.4.
Travel-time Tomography For High Contrast Media based on Sparse Data Yenting Lin Signal and Image Processing Institute Department of Electrical Engineering.
Epipolar geometry The fundamental matrix and the tensor
Design and simulation of micro-SPECT: A small animal imaging system Freek Beekman and Brendan Vastenhouw Section tomographic reconstruction and instrumentation.
Filtered Backprojection. Radon Transformation Radon transform in 2-D. Named after the Austrian mathematician Johann Radon RT is the integral transform.
C OMPUTER A SSISTED M INIMAL I NVASIVE S URGERY TOWARDS G UIDED M OTOR C ONTROL By: Vinay B Gavirangaswamy.
Computed Tomography References The Essential Physics of Medical Imaging 2 nd ed n. Bushberg J.T. et.al Computed Tomography 2 nd ed n : Seeram Physics of.
Medical Image Analysis Image Reconstruction Figures come from the textbook: Medical Image Analysis, by Atam P. Dhawan, IEEE Press, 2003.
Image Reconstruction from Projections Antti Tuomas Jalava Jaime Garrido Ceca.
1 Reconstruction Technique. 2 Parallel Projection.
Visual literacy is the ability, through knowledge of the basic visual elements, to understand the meaning and components of an image.
Matrices and Matrix Operations. Matrices An m×n matrix A is a rectangular array of mn real numbers arranged in m horizontal rows and n vertical columns.
Chapter 13 Discrete Image Transforms
Theory of Reconstruction Schematic Representation o f the Scanning Geometry of a CT System What are inside the gantry?
Copyright © Cengage Learning. All rights reserved. 8 Matrices and Determinants.
Calibrating a single camera
DIGITAL IMAGE PROCESSING
Linear Algebra Review.
GPU-based iterative CT reconstruction
Quick Graphs of Linear Equations
Evaluation of mA Switching Method with Penalized Weighted Least-Square Noise Reduction for Low-dose CT Yunjeong Lee, Hyekyun Chung, and Seungryong Cho.
Computed Tomography Image Reconstruction
Degradation/Restoration Model
Sample CT Image.
A Simple Image Compression : JPEG
Shaohua Kevin Zhou Center for Automation Research and
Introduction to Diffraction Tomography
Modern imaging techniques in biology
A special case of calibration
Image filtering Hybrid Images, Oliva et al.,
Image filtering Images by Pawan Sinha.
Image filtering Images by Pawan Sinha.
Image filtering Images by Pawan Sinha.
FPGA Accelerated 3-D Tomography
Image filtering Images by Pawan Sinha.
Numerical Analysis Lecture10.
Image filtering
Image filtering
Magnetic Resonance Imaging
Adaptive Filter A digital filter that automatically adjusts its coefficients to adapt input signal via an adaptive algorithm. Applications: Signal enhancement.
Intensity Transformation
Image Filtering Readings: Ch 5: 5. 4, 5. 5, 5. 6, , 5
Graph lines given their equation. Write equations of lines.
Lecture 13: CT Reconstruction
Computed Tomography (C.T)
Introduction to Artificial Intelligence Lecture 22: Computer Vision II
Solving Linear Systems of Equations - Inverse Matrix
Presentation transcript:

Computed Tomography

Introduction Tomography is a method to reconstruct the cross-section of an object. FBP, Laminograpgy, ART, SART, and SIRT are the most popular ways in tomography with different principles. We will also try to find out the advantages and disadvantages of ART, SART, and SIRT.

Outline Introduction Laminography Algebraic Reconstruction Technique (ART) Variations on ART Simultaneous Iterative Reconstruction Technique (SIRT)

Laminography Translational Laminography Rotational Laminography Focal slice 焦平面

Laminography

Outline Introduction Laminography Algebraic Reconstruction Technique (ART) Variations on ART Simultaneous Iterative Reconstruction Technique (SIRT)

Algebraic Reconstruction Technique (ART)

ART  

ART Additive ART process: 7 11 9 13 12 8  

ART 5 7 6 2 0 0

ART 5 7 6 2 10

ART 5 7 6 2 10 10

ART Final: 5 7 6 2

𝑏 𝑗 𝑥,𝑦 = 1, in 𝑗th pixel 0, otherwise ART To reconstruct a 2D continuous function 𝑓(𝑥,𝑦), we define an image basic function: 𝑏 𝑗 (𝑥,𝑦) 𝑏 𝑗 𝑥,𝑦 = 1, in 𝑗th pixel 0, otherwise

ℜ 𝑖 𝑓 𝑥,𝑦 ≈ 𝑗=1 𝑁 𝑓 𝑗 ℜ 𝑖 𝑏 𝑗 𝑥,𝑦 , 𝑖=1,2,…,𝑀 ART Let 𝑓 𝑥,𝑦 be discretized by N = n*n, and 𝑓 𝑗 is the mean of 𝑗th grid: 𝑓 𝑥,𝑦 ≈ 𝑗=1 𝑁 𝑓 𝑗 ∙ 𝑏 𝑗 (𝑥,𝑦) After Radon transform, 𝑓 𝑥,𝑦 can be represented as: ℜ 𝑖 𝑓 𝑥,𝑦 ≈ 𝑗=1 𝑁 𝑓 𝑗 ℜ 𝑖 𝑏 𝑗 𝑥,𝑦 , 𝑖=1,2,…,𝑀 𝑀: Total number of rays ℜ: An operator of Radon transform ℜ 𝑖 : the Radon transform of 𝑖th ray 將f(x,y,z)經過N=n*n*n 離散化 Fi 為每個欲重建voxel的衰減率 R是拉登轉換運算子 Rj是第j條射線的拉登轉換

ℜ 𝑖 𝑓 𝑥,𝑦 ≈ 𝑗=1 𝑁 𝑓 𝑗 ℜ 𝑖 𝑏 𝑖 𝑥,𝑦 , 𝑖=1,2,…,𝑀 ART Let 𝑤 𝑖𝑗 = ℜ 𝑖 𝑏 𝑗 𝑥,𝑦 , and 𝑝 𝑖 is projection value of 𝑖th ray. ℜ 𝑖 𝑓 𝑥,𝑦 ≈ 𝑗=1 𝑁 𝑓 𝑗 ℜ 𝑖 𝑏 𝑖 𝑥,𝑦 , 𝑖=1,2,…,𝑀 𝑗=1 𝑁 𝑤 𝑖𝑗 𝑓 𝑗 = 𝑝 𝑖 , 𝑖=1,2,…,𝑀

ART 𝑗=1 𝑁 𝑤 𝑖𝑗 𝑓 𝑗 = 𝑝 𝑖 , 𝑖=1,2,…,𝑀 𝑀: Total number of rays 𝑗=1 𝑁 𝑤 𝑖𝑗 𝑓 𝑗 = 𝑝 𝑖 , 𝑖=1,2,…,𝑀 𝑀: Total number of rays 𝑤 𝑖𝑗 : weighted coefficient

ART

ART Each equation can be regarded as a hyperplane of N-dimensional space, if unique solution exists, these M hyperplanes must intersect at one point. If M and N are small enough, we can use inverse matrix to find the solution, however, there are several factors that make these difficult to achieve: To reconstruct a 256*256 pixel image, N = 65536 and the weighted coefficient matrix size = 65536*65536 M ≠ N, M < N, M > N Error and noise make the matrix contradiction or no solution 矩陣大部分為0 為一個龐大的稀疏矩陣 耗時 M不等n使 無法使用逆矩陣去解 M<N無限解 M>N無解

ART

ART M>N

Outline Introduction Laminography Algebraic Reconstruction Technique (ART) Variations on ART Simultaneous Iterative Reconstruction Technique (SIRT)

Variations on ART  

Variations on ART  

Variations on ART Multiplicative ART: In MART (Multiplicative ART), each reconstructed element is changed in proportion to its magnitude. This is in sharp contrast to additive ART, where each element in the ray is changed a fixed amount, independent of its magnitude.

Variations on ART Multiplicative ART process: 7 11 9 13 12 8

Variations on ART Vertical rays: 𝑓 1 1 = 𝑓 3 1 = 11 2 ∗1= 5.5 𝑓 1 1 = 𝑓 3 1 = 11 2 ∗1= 5.5 𝑓 2 1 = 𝑓 4 1 = 9 2 ∗1=4.5 5 7 6 2 2 2 1

Variations on ART Horizontal rays: 𝑓 1 2 = 12 10 ∗5.5=6.6 𝑓 2 2 = 12 10 ∗4.5=5.4 𝑓 3 2 = 8 10 ∗5.5=4.4 𝑓 4 2 = 8 10 ∗4.5=3.6 5 7 6 2 5.5 4.5 10 10

Variations on ART Diagonal rays: 𝑓 1 3 = 7 10.2 ∗6.6=4.53 𝑓 2 3 = 13 9.8 ∗5.4=7.16 𝑓 3 2 = 13 9.8 ∗4.4=5.84 𝑓 4 3 = 7 10.2 ∗3.6=2.47 5 7 6 2 10.2 9.8 6.6 5.4 4.4 3.6

Variations on ART Result: 4.53 7.16 5.84 2.47

Variations on ART Vertical rays: 5 7 6 2 Vertical rays: 𝑓 1 1 = 11 10.37 ∗4.53= 4.8 𝑓 2 1 = 9 9.63 ∗7.16=6.69 𝑓 3 1 = 11 10.37 ∗5.84= 6.19 𝑓 4 1 = 9 9.63 ∗2.47=2.30 10.37 9.63 4.53 7.16 5.84 2.47

Variations on ART Horizontal rays: 5 7 6 2 Horizontal rays: 𝑓 1 2 = 12 11.49 ∗4.8=5.01 𝑓 2 2 = 12 11.49 ∗6.69=6.99 𝑓 3 2 = 8 8.49 ∗6.19=5.83 𝑓 4 2 = 8 8.49 ∗2.3=2.16 11.49 4.8 6.69 6.19 2.3 8.49

Variations on ART Diagonal rays: 5 7 6 2 Diagonal rays: 𝑓 1 3 = 7 7.17 ∗5.01=4.89 𝑓 2 3 = 13 12.82 ∗6.99=7.09 𝑓 3 2 = 13 12.82 ∗5.83=5.91 𝑓 4 3 = 7 7.17 ∗2.16=2.10 7.17 12.82 5.01 6.99 5.83 2.16

Variations on ART 5 7 6 2 Final: 4.89 7.09 5.91 2.10

Outline Introduction Laminography Algebraic Reconstruction Technique (ART) Variations on ART Simultaneous Iterative Reconstruction Technique (SIRT)

Simultaneous Iterative Reconstruction Technique (SIRT) Iterative algorithm: : total number of elements in a projection : iteration : a projection that passes : an element along the th projection : the sum of measured data for a projection : total number of projections that pass

SIRT 7 11 9 13 12 8

SIRT 5 7 6 2 0 0 0 0

SIRT 5 7 6 2 9 10.33 9.67 11 10.67 9.33 5 5.67 5.33 4

ART DEMO

你只要了解: ART的步驟 ART與SIRT的差別