A Sample Gbrowse-Moby BioMoby Browsing Session

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Presentation transcript:

A Sample Gbrowse-Moby BioMoby Browsing Session Start with a keyword “apetala3”, and limit the search to only those services offered by MIPS. Get EMBL Accession numbers matching that keyword Retrieve FASTA about the selected accession number Use that FASTA to do a BLAST search against the Snapdragon (Antirrhinum) database Extract the “hit” Antirrhinum sequence accession numbers from the selected Blast report Get the Snapdragon Locus ID’s associated with the selected sequence identifier. Retrieve the list of Alleles for that Locus Retrieve the mutant images for the selected Allele Retrieve the SCUFL document describing the workflow that you just “browsed through”, that can be loaded into e.g. the Taverna software. The final slide shows a visualization of that workflow as displayed by the Taverna software.

This is SCUFL – Simple Conceptual Unified Flow Language It is a complete record of everything you just did, and it can be saved for use in the Taverna workflow application that we will look at later…