The Nuclear Pore Complex as a Flexible and Dynamic Gate

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The Nuclear Pore Complex as a Flexible and Dynamic Gate Kevin E. Knockenhauer, Thomas U. Schwartz  Cell  Volume 164, Issue 6, Pages 1162-1171 (March 2016) DOI: 10.1016/j.cell.2016.01.034 Copyright © 2016 Elsevier Inc. Terms and Conditions

Figure 1 Function of the NPC in Cellular Communication The nuclear pore complex (NPC) (human proteins, gray; EMDB code 3103; von Appen et al., 2015) coordinates a multitude of transport processes, including nuclear import and export, and viral interactions. Depicted in the cartoon, human hepatitis B virus (cyan; EMDB code 3015) and an import complex comprising importin-β, importin-α, and cargo (blue, green, and yellow; composite of PDB codes 1QGK, 1EE5, and 1K5J, respectively) are ready to traverse the NPC. Exiting the nucleus are the 60S pre-ribosomal subunit (yellow-orange; PDB code 1JJ2), an mRNP comprising the export factor TAP bound to RNA (pink and purple; PDB code 3RW6), and a protein export complex comprising exportin Cse1-Kap60 Cargo-RanGTP (green; PDB code 1WA5). Cell 2016 164, 1162-1171DOI: (10.1016/j.cell.2016.01.034) Copyright © 2016 Elsevier Inc. Terms and Conditions

Figure 2 Overall Structure of the NPC Cryo-ET reconstruction of the human NPC from HeLa cells (EMDB code 3103; von Appen et al., 2015). Cut-away view showing half of an NPC embedded in the nuclear envelope also shown (yellow). Additional structural elements, i.e., cytoplasmic filaments and nuclear basket that have been excluded from the cryo-ET analysis, are added schematically. Nucleoporins from yeast and metazoa are listed and color-matched according to their approximate positions within the NPC. Cell 2016 164, 1162-1171DOI: (10.1016/j.cell.2016.01.034) Copyright © 2016 Elsevier Inc. Terms and Conditions

Figure 3 Domain Architecture of Nucleoporins Yeast nucleoporins with their metazoan homologs are listed. The domain architecture is derived primarily from X-ray crystallographic data, combined with structure prediction whenever experimental data are not yet available. The vast majority of nucleoporins are built from a limited set of structural modules, which characteristically occur in multiple proteins. Cell 2016 164, 1162-1171DOI: (10.1016/j.cell.2016.01.034) Copyright © 2016 Elsevier Inc. Terms and Conditions

Figure 4 Representative Large Structures and Protein Complexes from the NPC (A) Composite structure built from six overlapping individual crystal structures (Kelley et al., 2015). (B) The topology of the trimeric Nsp1-Nup57-Nup49 complex from fungi is identical to that of the metazoan Nup62-Nup54-Nup58 complex (Chug et al., 2015; Stuwe et al., 2015a). Both complexes are anchored to the NPC scaffold via Nic96/Nup93. Despite low sequence similarity, scaffold structures are largely conserved between evolutionarily highly diverged eukaryotic species. (C) Structure of the large scaffold Nup188 built from three segments: blue-green and blue elements are crystal structures (Andersen et al., 2013), whereas the gray segment is modeled. All panels are on the same scale. Cell 2016 164, 1162-1171DOI: (10.1016/j.cell.2016.01.034) Copyright © 2016 Elsevier Inc. Terms and Conditions