Spearman’s correlation analysis of microbiota and NMR spectra of the control and ciprofloxacin groups (A, C) or the vancomycin-imipenem group (B, D) after.

Slides:

Advertisements

Similar presentations

Heat maps summarizing Spearman correlations between log10-transformed cytokine levels (log IL-6, CCL-2, TNF, and VEGF-A [in picograms/milliliter]) in blood.

Advertisements

Inflammatory phenotypes in patients with severe asthma are associated with distinct airway microbiology Steven L. Taylor, BSc, Lex E.X. Leong, PhD, Jocelyn.

Changes in archaeal diversity during great ape diversification.

Fig. 4. Specific antibiotics reduce fecal biomass in mice and humans.

Microbial interaction network for (A) colon cancer tumour microbiota and (B) subset of direct connections to colon cancer-associated taxa in tumour samples.

Fig. 2. Associations between bacterial taxa abundance ascertained by fecal shotgun metagenomic sequencing and the fecal metabolome in healthy pediatric.

Correction Journal of Allergy and Clinical Immunology

(A) Hierarchical clustering was performed to identify groups of patients with similar RNASeq expression of 20 genes associated with reduced survivability.

Oxalate handling for N. albigula in vivo for animals that completed the diet trial (n = 7). Oxalate handling for N. albigula in vivo for animals that completed.

Cell sorting scheme and its impact on bacterial diversity of the samples. Cell sorting scheme and its impact on bacterial diversity of the samples. (A)

Antimicrobial zone of inhibition.

Bacterial biomarkers associated with disease severity.

(A) Refined profile principal component analysis loading weights plot was used to derive insight into possible association of biomarkers. (A) Refined profile.

Hierarchical cluster analysis of reproducible parent masses (MS) representative of produced SMs from oral in vitro-grown biofilm representing >100 bacterial.

Conditions that countered intracellular alkalization increased M

Comparison of microbial communities in adult and children visitors and villagers. Comparison of microbial communities in adult and children visitors and.

Family level bar plots generated in QIIME 1. 9

Predicted microbiota age against the actual age of visitors and villagers. Predicted microbiota age against the actual age of visitors and villagers. (A)

Statistical comparison of metabolites and analysis of differential metabolites and key metabolic pathways. Statistical comparison of metabolites and analysis.

Expression response of AT-rich genes to lanthanides.

Relative abundances of dominant phyla in each treatment and indicator genera in PyOM300, PyOM700, and control soils. Relative abundances of dominant phyla.

Individual genes exhibit distinct stage-specific expression among female gametocytes. Individual genes exhibit distinct stage-specific expression among.

Pearson correlation of gene expression identifies distinct groups of male- and female-enriched genes. Pearson correlation of gene expression identifies.

FLC treatment results in an increase in ploidy in a significant fraction of cells. FLC treatment results in an increase in ploidy in a significant fraction.

The distribution of Sias in tissues from 10-day postfertilization embryonated chicken eggs. The distribution of Sias in tissues from 10-day postfertilization.

Cecal metabolome during C. difficile colonization and infection.

Gene expression separates male and female single gametocytes into distinct populations. Gene expression separates male and female single gametocytes into.

Relative growth of WT R2866 and the R2866ΔampG gene deletion mutant with Triton X-100. Relative growth of WT R2866 and the R2866ΔampG gene deletion mutant.

Spearman correlation of normalized relative abundances between MAGs from TBE6 and taxa in the epilimnion of the environment of origin (Trout Bog Lake).

Log2-fold change in relative abundance of differentially abundant OTUs in PyOM300 and PyOM700 (a and b) and in Ps soil and Ar soil (c and d). Log2-fold.

Candida albicans levels were decreased in the mouth and stool of healthy human volunteer(s) when teeth were brushed more often. Candida albicans levels.

RNA abundance correlates with fitness.

Co-occurrence network in tongue microbiota of 506 elderly adults built from SparCC correlation coefficients between sequence abundances. Co-occurrence.

Numbers of L. plantarum AJ11 and L

C. difficile colonization alters gene transcription of taxonomic groups differentially between antibiotic pretreatments. C. difficile colonization alters.

Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.

Microbial communities of the differently treated mice with lupus cluster separately after treatment. Microbial communities of the differently treated mice.

Shifts in the microbial community compositions of the control and antibiotic groups. Shifts in the microbial community compositions of the control and.

Comparison of taxonomic differences between stool microbiota from healthy patients and stool microbiota from ICU patients and stool from healthy patients.

Gallium isotopes at m/z and 70

Impact of medical data on bacterial diversity of fractionated samples.

Representational similarity analysis based on the Euclidean distance.

Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;

Prime and boosts with PBK001 vaccine provided 100% protection with low bacterial burden in organs. Prime and boosts with PBK001 vaccine provided 100% protection.

OTU and family-level changes in murine gut as a result of acarbose feeding on a high-starch diet. OTU and family-level changes in murine gut as a result.

TbERP silencing has minimal effect on proliferation.

Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.

Functional microbiome differences between high-fat and standard chow diets. Functional microbiome differences between high-fat and standard chow diets.

ITS rRNA gene locus. ITS rRNA gene locus. Schematic of the eukaryotic ribosomal gene cluster. The SILVA database contains sequences of the 18S gene, while.

Heterotrophic and autotrophic particle (cell) abundance in water column. Heterotrophic and autotrophic particle (cell) abundance in water column. Small.

KEGG cluster of DEGs of S

ICU stays result in drastic community changes.

Comparison between early-life and year 2 AMR levels.

LEfSe comparison analysis between the control and ciprofloxacin or vancomycin-imipenem groups at the end of antibiotic treatment (A or B, respectively)

Beta-diversity analyses of microbial taxa recovered from ATM keypads.

Normalized abundance of tetracycline resistance genes in Swedish infants by AMR++. Normalized abundance of tetracycline resistance genes in Swedish infants.

(A) Mean NMR spectra of patient sera show differences in metabolite intensities between responders and non-responders before (a) and 6 months after (b)

Bipartite co-occurrence networks were generated in CoNet and visualized in Cytoscape to display significant strong positive and negative co-occurring relationships.

The transition to family foods with higher protein and fiber content correlates with increased gut microbiota diversity. The transition to family foods.

PHs of olive brines. pHs of olive brines. The average ± standard deviation (SD) of two independent replicates at each time point is shown. Acetic acid.

Relative proportions of taxa and UPGMA hierarchical clustering of the mock communities. Relative proportions of taxa and UPGMA hierarchical clustering.

Volcano plot analysis of fecal metabolites altered in the ciprofloxacin or vancomycin-imipenem groups at the end of treatment (A) or 9 days after cessation.

Paradigm for the cycle of precision vaccinology.

Pseudomonas PIV enhances pneumococcal pneumonia and bacteremia in C57BL/6 mice. Pseudomonas PIV enhances pneumococcal pneumonia and bacteremia in C57BL/6.

WLBU2 disrupts P. aeruginosa biofilms during RSV coinfection of bronchial epithelial cells. WLBU2 disrupts P. aeruginosa biofilms during RSV coinfection.

The zebrafish microbiota provides a barrier to E. coli colonization.

Water quality parameters.

Distinct antibiotic pretreatments have differential impacts on C

Total ARG reads normalized by read length and 16S gene read count in early life in Bangladesh. Total ARG reads normalized by read length and 16S gene read.

Prediction of cross-resistance among rifampin-resistant isolates.

Presentation transcript:

Spearman’s correlation analysis of microbiota and NMR spectra of the control and ciprofloxacin groups (A, C) or the vancomycin-imipenem group (B, D) after 14 days of antibiotic treatment and 9 days after cessation of antibiotics, respectively. Spearman’s correlation analysis of microbiota and NMR spectra of the control and ciprofloxacin groups (A, C) or the vancomycin-imipenem group (B, D) after 14 days of antibiotic treatment and 9 days after cessation of antibiotics, respectively. Bacterial taxa and metabolites in the correlation matrix were sorted based on the Euclidean distance and Ward’s method of hierarchical clustering. Significant microbiota-metabolite correlations were determined based on an r of less than −0.75 or more than 0.75 and an FDR adjusted P value of less than 0.01. Jocelyn M. Choo et al. mSphere 2017; doi:10.1128/mSphere.00005-17