BRC Science Highlight Survey of fungal genomes reveals functional adaptation of a set of borrowed bacterial genes Objective Survey a broad range of fungal.

Slides:



Advertisements
Similar presentations
1. How does conjugation work? Sex in Bacteria How do bacteria exchange DNA.
Advertisements

VIRUS PROPERTIES Infectious – must be transmissible horizontally Intracellular – require living cells RNA or DNA genome, not both* Most all have protein.
Microbial Genomes Features Analysis Role of high-throughput sequencing Yeast - the eukaryotic model microbe Databases –TIGR CMR –NCBI Microbial Genomes.
Structure, function and growth of prokaryote and eukaryote cells (iii) Differentiation of cells into tissues and organs. (iv) Cell and tissue culture –
1. How does conjugation work? Sex in Bacteria How do bacteria exchange DNA.
RECONSTRUCTING A “UNIVERSAL TREE” Classical view Prokaryotes Eukaryotes 1977: C. Woese 3 “primordial kingdoms” (or domains) - based on ribosomal RNA sequence.
Section 2 CHAPTER 10. PROTEIN SYNTHESIS IN PROKARYOTES Both prokaryotic and eukaryotic cells are able to regulate which genes are expressed and which.
Microbial Genetics - DNA Transfer l Review of Information Transfer in Cell l Recombination l Transfer of DNA &Genetic Recombination in Bacteria –Conjugation.
Microbial Genetics. DNA is the Genetic Material Griffiths Avery et al.
Evolution of cellulolytic activity in Streptomyces
BRC Science Highlight Plants with different lipid acyl composition demonstrate divergent yet co-evolved lipid transport components Objective To develop.
BME 130 – Genomes Lecture 8 Genome Anatomies.
BRC Science Highlight Many genomic positions in switchgrass contribute to flowering time, a major biomass yield determinant Objective Gain a better understanding.
BRC Science Highlight Suppression of the lignin biosynthetic gene CCR1 results in decreased lignin recalcitrance and increased digestibility Objective.
BIO : Bioinformatics Lab
BRC Science Highlight Mechanism of Ionic Liquid Toxicity and Rational Engineering of a Tolerant Yeast Strain Objective To identify genetic determinants.
BRC Science Highlight Dynamics of gene expression during development and expansion of vegetative stem internodes of bioenergy sorghum Objective Conduct.
Regulation of Gene Expression
Transcriptional analysis of flowering time in switchgrass
BRC Science Highlight WRINKLED1, a key regulator of oil biosynthesis, also affects hormone homeostasis Objective WRINKLED1 (WRI1) is a key transcriptional.
BRC Science Highlight Complex lignin composition identified in leaf tissues of the Canary Island date palm Objective Examine the lignin of cell walls from.
BRC Science Highlight OptSSeq: High-Throughput Sequencing Readout of Growth Enrichment Defines Optimal Gene Expression Elements Objective Designing synthetic.
BRC Science Highlight Altering carbon allocation in hybrid poplar impacts cell wall growth and development Objective In this study we test the hypothesis.
Membrane protein expression Proteins are the building blocks of all living organisms and play crucial roles in biological processes. To investigate how.
Can We Just Say: Transcription Second?
Comparison of HTGs involved in nutrition synthesis, CIP, bacterial cell wall synthesis, population regulation, and plant or fungal cell wall degradation.
Biomass composition and lignin chemistry of energy sorghum
Evolution of genes involved in regulating flowering time in grasses
Genome Evolution: Horizontal Movements in the Fungi
p53 and Apoptosis: It's Not Just in the Nucleus Anymore
BRC Science Highlight Understanding the mechanism of mixed-linkage glucan synthesis and accumulation in the cell wall of grasses Objective Determine the.
Warm Up 10/6: (Accessing old pathways!)
Genome Evolution: Horizontal Movements in the Fungi
Optimized lignin analytics to improve biomass conversion efforts
B. Brett Finlay, Grant McFadden  Cell 
In This Issue Cell Volume 158, Issue 5, (August 2014)
Volume 22, Issue 6, Pages (June 2012)
16.1 – Genetic Variation in Bacteria
BRC Science Highlight Plants have convergently evolved to use “zips” (chemically labile ester linkages) in their lignin polymers Objective Survey a set.
Horizontal gene transfer
Nitzan Koppel, Emily P. Balskus  Cell Chemical Biology 
Mutations that alter the bacterial cell envelope increase lipid production BRC Science Highlight Objective Microbial lipids are a potential replacement.
Eukaryotic Transcription Activation: Right on Target
BRC Science Highlight Developmental regulation of processes, pathways, and genes that affect stem growth and composition in sorghum Objective Obtain information.
Figure 3. Genes differentially expressed in batch cultures during adaptation to low temperature. Genes differentially expressed in batch cultures during.
Volume 152, Issue 1, (January 2013)
BRC Science Highlight Lignocellulosic biomass conversion residue transformed into medium-chain fatty acid bioproducts Objective Investigate the potential.
Archaea and the Origin(s) of DNA Replication Proteins
Opening Windows to the Genome
Volume 130, Issue 6, (September 2007)
Protist Evolution: Stealing Genes to Gut It Out
Biological cleavage of lignin bonds
BRC Science Highlight Discovery of a new type of bacterial enzyme able to cleave bonds in lignin Objective Expand our knowledge of enzymes that cleave.
Division of Labor: Minor Splicing in the Cytoplasm
BRC Science Highlight Identification of a secondary metabolite gene cluster in budding yeasts with important implications for biofuel production Objective.
Volume 143, Issue 6, (December 2010)
Functional genomics: Learning to think about gene expression data
BRC Science Highlight Yeast evolved for enhanced xylose utilization reveal interactions between cell signaling and Fe-S cluster biogenesis Objective Obtain.
Pushing Back the Expansion of Introns in Animal Genomes
MAGs and testes transcript expression levels in the An. gambiae complex. MAGs and testes transcript expression levels in the An. gambiae complex. (A) Percentage.
The Give and Take of Host-Microbe Symbioses
BRC Science Highlight Biological funneling of aromatics from chemically depolymerized lignin produces a desirable chemical product Objective Engineer Novosphingobium.
Structural features of substrate specificity
Lipid-producing sorghum as a source of biodiesel
BRC Science Highlight Lipid droplets engineered for the production of terpenoids in plant leaves Objective Increase production of terpenoid bioproducts.
Volume 163, Issue 4, (November 2015)
Volume 163, Issue 2, (October 2015)
Volume 134, Issue 6, (September 2008)
In This Issue Cell Volume 145, Issue 3, (April 2011)
Volume 148, Issue 1, (January 2012)
Presentation transcript:

BRC Science Highlight Survey of fungal genomes reveals functional adaptation of a set of borrowed bacterial genes Objective Survey a broad range of fungal genomes to identify functions acquired by horizontal operon transfer. Approach Conduct phylogenetic studies using a broad range of fungal genomes to identify biochemical functions not typically associated with fungi. Conduct phylogenetic hypothesis testing to identify how these pathway genes were acquired. Conduct mRNA studies to identify how the transferred genes are expressed. Conduct biochemical testing of yeast culture extracts for product formation. Results/Impacts Some yeast species harbor enterobactin bio-synthesis genes, unseen in other fungi, resulting from an ancient horizontal operon transfer from bacteria to a group of yeasts. Transferred pathway genes are actively expressed in a manner consistent with canonical eukaryotic transcription. Such acquisition and adaptive change may provide new biochemical functions that could be harnessed to develop new strategies to produce valuable bioproducts. Notes: text Kominek, J. et al. “Eukaryotic Acquisition of a Bacterial Operon.” Cell 176, 1356-1366 (2019) [DOI: 10.1016/j.cell.2019.01.034]. GLBRC March 2019