miRC134 NBS 10 siR2331 NBS 60 ATPB miRC130a5

Slides:

Advertisements

Similar presentations

What is the sex of these two roundworms? Question 1 Question 2.

Advertisements

MiRNAPredicted targetsPutative function of targets miRC1GRMZM2G029833_T01DNA binding / DNA-directed RNA polymerase miRC4 GRMZM2G171796_T01; GRMZM2G355906_T03;

A Fraction of read count as read length B Fraction of unique reads as read length Length (nt) Read count fraction (%) Unique read fraction (%) Supplemental.

Supplementary Figure S4

Figure 2 Dicer and RISC (RNA-induced silencing complex).

Raw data VS. Residual value

Figure 1. drb7.2 mutant plants display altered accumulation of endoIR-siRNA. Wild-type (Col-0) and drb7.2 mutant plants were subjected to high throughput.

MicroRNA-mediated DNA methylation in plants

Z-score -1 1 miR390 TAS3c Phased siRNAs Target siR506 siR406

Regulatory Subunits of Energy-Dependent Proteases

Network topology reflects target gene expression profile and function.

Felix Dietlein, Lisa Thelen, H. Christian Reinhardt Trends in Genetics

A Mitochondrial Power Play in Lymphoma

Trans-Kingdom RNA Silencing in Plant–Fungal Pathogen Interactions

Prokaryotic Development: A New Player on the Cell Cycle Circuit

Next-generation Sequencing Identifies Articular Cartilage and Subchondral Bone Mirnas after ESWT on Early Osteoarthritis Knee C.-J. Wang, J.-H. Cheng,

Regulatory Subunits of Energy-Dependent Proteases

Comparison of gene expression profiles in granulosa and cumulus cells after ovulation induction with either human chorionic gonadotropin or a gonadotropin-releasing.

Regulating Cancer Stem Cells the miR Way

What type of tissue is indicated by the blue arrow?

Shogo Ito, Young Hun Song, Takato Imaizumi Molecular Plant

Figure 9. Categories of pha-siRNA-yielding genes

Figure 6. Categories of pha-siRNA-yielding genes

Figure 3 Differentiation and functional control of T-cell subsets

Supplemental Figure S1. Expression of MYOCD, MYOCD ceRNA and miRNAs

mRNA Degradation and Translation Control

Volume 79, Issue 11, Pages (June 2011)

Understanding Tissue-Specific Gene Regulation

miRC134 NBS 10 siR2331 NBS 60 ATPB miRC130a5

Supplemental Figure S4. Expression changes of phased and non-phased siRNAs among the three tissues examined The expression changes of phased and non-phased.

Volume 7, Issue 1, Pages (January 2014)

Copper Transporters Regulation

Edwards Allen, Zhixin Xie, Adam M. Gustafson, James C. Carrington Cell

Volume 1, Issue 2, Pages (August 2015)

Nat. Rev. Endocrinol. doi: /nrendo

Mechanisms and Consequences of Alternative Polyadenylation

Targeting AMPK in prostate cancerMT 63–78 (green burst) binds to the β1 subunit of AMPK, activating its enzymatic function. Targeting AMPK in prostate.

RNAi: Prokaryotes Get in on the Act

Figure 4. Differentially expressed miRNAs and isomiRNAs between different pairs of tissues The differentially expressed miRNAs and their isomiRNAs are.

Statistical comparison of metabolites and analysis of differential metabolites and key metabolic pathways. Statistical comparison of metabolites and analysis.

Genome-wide analysis of p53 occupancy.

Volume 22, Issue 3, Pages (March 2012)

Novel functional roles of uncharacterized genes as functional regulators of cellular cholesterol levels. Novel functional roles of uncharacterized genes.

Regulation by Small RNAs in Bacteria: Expanding Frontiers

GDF11 and the Mythical Fountain of Youth

Figure 9. Categories of pha-siRNA-yielding genes

Prediction of Plant MicroRNA Targets

To Bloom or Not to Bloom: Role of MicroRNAs in Plant Flowering

Alterations in mRNA 3′ UTR Isoform Abundance Accompany Gene Expression Changes in Human Huntington’s Disease Brains Lindsay Romo, Ami Ashar-Patel, Edith.

Volume 29, Issue 5, Pages (May 2016)

Volume 122, Issue 6, Pages (September 2005)

Volume 133, Issue 1, Pages (April 2008)

Photoperiodism: The Coincidental Perception of the Season

Figure 7. Expression changes of phased and non-phased siRNAs among the three tissues examined The expression changes of phased and non-phased siRNAs between.

A molecular evolutionary concept connecting nonhost resistance, pathogen host range, and pathogen speciation Paul Schulze-Lefert, Ralph Panstruga Trends.

Making Sense of Transcription Networks

Molecular Mechanisms of Long Noncoding RNAs

Volume 17, Issue 4, Pages (October 2009)

Z-score -1 1 miR167 ARF 2 Phased siRNAs Target siR362 miRNA trigger

Jeffrey Caplan, Meenu Padmanabhan, Savithramma P. Dinesh-Kumar

Alexander Kiani, Anjana Rao, Jose Aramburu Immunity

Volume 16, Issue 9, Pages (May 2006)

Trans-Kingdom RNA Silencing in Plant–Fungal Pathogen Interactions

Making the Bread: Insights from Newly Synthesized Allohexaploid Wheat

Zinc Toxicity: From “No, Never” to “Hardly Ever”

Volume 12, Issue 3, Pages (March 2019)

Volume 7, Issue 2, Pages R19-R23 (February 1999)

Genome-wide Functional Analysis Reveals Factors Needed at the Transition Steps of Induced Reprogramming Chao-Shun Yang, Kung-Yen Chang, Tariq M. Rana

Distinct subtypes of CAFs are detected in human PDAC

Volume 4, Issue 1, Pages (January 2011)

Presentation transcript:

miRC134 NBS 10 siR2331 NBS 60 ATPB miRC130a5 -1 1 Z-score miRNA trigger Target miRC134 TRF NBS GRAS Rib NSLT MAF SuS ZF Phased siRNAs NBS 10 siR1483 Trans-cleavage Phased siRNAs siR2331 siR120 Non-phased siRNAs miRNA trigger Target NBS 60 ATPB miRC130a5 Figure 12. a pha-siRNA regulatory pathway that is co-regulated by miRC134 and pha-siR2331 The pathway of pha-siRNAs derived from NBS 10 that is co-regulated by miRC134 and phased siRNAs, siR2331, is shown as indicated. The blue arrows and lines show the regulatory pathway of pha-siRNAs produced from NBS 10, while the dark orange arrows and lines show the regulatory pathway of trans-cleavage by pha-siRNA, siR2331, which is derived from NBS 60. The colors in the boxes from left to right represent the Z-score of expression values of sRNAs in the leaf, flower and boll, respectively, while miRC130a5, siR2331, and siR120, are not differentially expressed in the tissues exampled. NBS 10 or 60: NBS-LRR disease resistance protein 10 or 60; ZF: Zinc finger protein; SuS: sucrose synthase; TRF: Transducin-related family protein; GRAS: GRAS family protein; Rib: Ribophorin 1 family protein; NSLT: Non-specific lipid-transfer protein; MAF: Mitochondrial carrier family protein; ATPB: ATP binding protein.