Differentially expressed annotated protein-coding and non-coding RNAs in SSA/Ps and traditional HPs identified by RNA-Seq. Differentially expressed annotated.

Slides:

Advertisements

Similar presentations

Chapter 11 Review. Explain the difference between each of the following 1. Operator, promoter -Operator: DNA segment where an inhibitor protein binds.

Advertisements

SSA/Ps Syndromic SSA/Ps Sporadic HPs Sporadic Genes differentially expressed ≥ 2-fold in syndromic and sporadic SSA/Ps and hyperplastic.

Figure S2 A B Log2 Fold Change (+/- cAMP) Transcriptome (9hr)

LncRNAs exert their effects by diverse mechanisms. LncRNAs exert their effects by diverse mechanisms. (A) lncRNAs can.

KG-501 suppresses NSCLC/IL-1β CM–induced migration of HUVECs by regulating IL-1β–induced CXC chemokine gene expression in NSCLC cells. KG-501 suppresses.

IL-1β differentially regulates CXCL5 and CXCL8 protein secretion in NHTBE and NSCLC cells. IL-1β differentially regulates CXCL5 and CXCL8 protein secretion.

IL-1β stimulates CXCL5 and CXCL8 gene expression and protein secretion in A549 cells in a time- and dose-dependent manner. IL-1β stimulates CXCL5 and CXCL8.

Loss of SMARCA4 expression or activity derepresses miR-27a.

RNA-seq analysis of iWAT and eWAT.

Several microRNAs are differentially expressed in the glomeruli between different types of kidney disease. Several microRNAs are differentially expressed.

Expression profiling of snoRNAs in normal hematopoiesis and AML

Flowchart for calculating the relative risk (RR) for cancer X and lung cancer (LC). Flowchart for calculating the relative risk (RR) for cancer X and lung.

Quantification of the significantly changed metabolites.

Nat. Rev. Gastroenterol. Hepatol. doi: /nrgastro

A. glioblastoma with high (+++) KIT protein expression.

Differential expression levels of archaella operon genes and respiratory chain genes in Δsaci_pp2a and Δsaci_ptp. Differential expression levels of archaella.

AZA treatment induces a distinct gene-expression pattern in stromal cells. AZA treatment induces a distinct gene-expression pattern in stromal cells. (A-C)

Differential protein, mRNA, lncRNA and miRNA regulation by p53.

Intestinal differentiation is coupled with global rewiring of gene expression Intestinal differentiation is coupled with global rewiring of gene expression.

RNA abundance correlates with fitness.

RNA-Seq analysis of CYR1 cells in the adaptation to acid pH.

Expression changes of specific epigenetic-controlled tumor-related genes by the prenatal/maternal BSp treatment. qRT-PCR and Western blot analysis were.

Additional file 4: Comparison of RNA-Seq and RT-qPCR expression analyses of candidate genes between RIL165 and RIL387.

Fig. 5 Correlation of RNA expression and protein abundance.

Initial analysis of the transcriptional effects in eight carbon storage mutants (1 to 8; ΔphbA, phbB::ΩSpSm, ΔphbAB, ΔphbC, ΔphaZ, ΔbdhA, acsA2::Tn5, glgA1ΔPstI)

Expression of cGMP signaling components in polyps.

CD4+CLA+CD103+ T cells from human blood and skin share a transcriptional profile. CD4+CLA+CD103+ T cells from human blood and skin share a transcriptional.

Single-cell atlas of lincRNA expression during mESC to NPC differentiation. Single-cell atlas of lincRNA expression during mESC to NPC differentiation.

Reduced OXPHOS expression and increased UCP expression.

Gene expression changes associated with response to combination CPI-444 and anti–PD-L1 treatment in MC38 tumors. Gene expression changes associated with.

A, SSA/P is seen in the right colon (outlined by arrows) at colonoscopy. A, SSA/P is seen in the right colon (outlined by arrows) at colonoscopy. Note.

Changes to the FlyBase gene model annotation set in the era of high-throughput data. Changes to the FlyBase gene model annotation set in the era of high-throughput.

Effects of AG on the colon histology score in the acute DSS colitis model. Effects of AG on the colon histology score in the acute DSS colitis model. Ten.

A, unsupervised hierarchical clustering of the expression of probe sets differentially expressed in the oral mucosa of smokers versus never smokers. A,

Progastrin expression in colonic tissues and Kaplan–Meier survival curves. Progastrin expression in colonic tissues and Kaplan–Meier survival curves. A,

Effects of maternal exposure during pregnancy to tap water (control), LIM, or HIM on offspring tumor incidence (% rats with tumors; A), tumor multiplicity.

Heat map of genes for which CR significantly altered expression versus AL. Cluster analysis of genes significantly changed by the CR intervention compared.

Expression of CRC stem cell markers and L1 in CRC cells.

Effect of UV irradiation on PTHRP gene expression.

EMT gene expression patterns of M-Wnt and E-Wnt cells in vitro and in vivo. EMT gene expression patterns of M-Wnt and E-Wnt cells in vitro and in vivo.

Constitutive characteristics in HL-mice and HL-HPS-mice.

Overview of TIMER modules on the website.

EN1-associated chromatin complexes in breast cancer cells.

A, Proportion of variants detected in the MMR genes.

Expression of S100A11 in bulk pancreatic tissues (pancreatic cancer, n = 22; IPMN, n = 18; nonneoplastic pancreas, n = 22). Expression of S100A11 in bulk.

Bim expression and activation correlates with reduced Notch3 expression and increased anoikis. Bim expression and activation correlates with reduced Notch3.

Bortezomib induces an NRF2 signature and NRF2 protein in tumor cells from leukemic MCL. Gene sets regulated by bortezomib (Supplementary Tables S3 and.

Reduced klotho expression in pancreatic cancer.

HRs (Y-axis) associated with use of metformin alone, combination of metformin with statins, and combination of metformin with finasteride (relative to.

The influence of diverse genotypes of rs on the expression of TRAF3 (A), IFNβ (B), in PBMCs of healthy individuals. The influence of diverse genotypes.

MAPK/ERK signaling regulates TLR4 gene expression in response to BRAFV600E. MAPK/ERK signaling regulates TLR4 gene expression in response to BRAFV600E.

CD24 expression. CD24 expression. A, By global gene expression, CD24 is found to be highly upregulated in SEF (80×) and in LGFMS (37×) as compared with.

Enhanced expression of Cap43 gene by nickel in breast cancer cell lines. Enhanced expression of Cap43 gene by nickel in breast cancer cell lines. Expression.

Progastrin staining in colon adenomas and adenocarcinomas.

The influence of diverse genotypes of rs on the expression of MAVS (A), IFNβ (B), in PBMCs of healthy individuals. The influence of diverse genotypes.

HOXA11-AS acts as a ceRNA for miR-1297.

Validation of NAA's cancer specificity in lung cancer.

A, Proportion for different in silico predictions at the RNA level.

RRP1B interacts with TRIM28 and HP1α at regions associated with H3K9me3 and decreased gene expression. RRP1B interacts with TRIM28 and HP1α at regions.

Defining the eTME genes.

Expression of chemokine receptors in A-498 cell line.

Identification of putative TET1 targets in TNBC

IL-1β expression is increased in MM cell lines by the co-culture with platelets in vitro. IL-1β expression is increased in MM cell lines by the co-culture.

Effects of broccoli sprouts (BS) or alfalfa sprouts (AS) on H

Transcriptomic Analysis of GmSIN1 OE-1 Transgenic Soybean.

Effect of SFN on the total activity and protein expression of HDACs in JB6 P+ cells. Effect of SFN on the total activity and protein expression of HDACs.

Tobacco-specific carcinogens induce methylation, DNA adducts, DNA damage, and activation of DNMT1. Tobacco-specific carcinogens induce methylation, DNA.

Transcriptome profiling of PD-L1 antibody–treated macrophages showed inflammatory phenotype, increased survival and proliferation, and decreased apoptosis.

Bioinformatic analyses suggest that PI3K/AKT signaling may be a key downstream pathway of tazarotene signaling. Bioinformatic analyses suggest that PI3K/AKT.

CONSORT diagram. a, 5 had a major treatment violation (3 refused and 2 received wrong treatment) but were included in the analyses; b, 4 had a major treatment.

Presentation transcript:

Differentially expressed annotated protein-coding and non-coding RNAs in SSA/Ps and traditional HPs identified by RNA-Seq. Differentially expressed annotated protein-coding and non-coding RNAs in SSA/Ps and traditional HPs identified by RNA-Seq. A, differentially expressed genes with a ≥2-fold change and FDR < 0.05 in SSA/Ps (n = 12 for syndromic and n = 9 for sporadic) compared with control right colon (n = 10) and HPs (n = 10) compared with control left colon (n = 10). B, relative abundance of protein-coding and non-coding RNAs differentially expressed in SSA/Ps. Non-coding RNAs included antisense non-coding RNAs, long intergenic non-coding RNAs (lincRNAs), pseudogenes, and other miscellaneous (Misc) RNAs, including immunoglobulin and intronic RNAs. Priyanka Kanth et al. Cancer Prev Res 2016;9:456-465 ©2016 by American Association for Cancer Research