The pCT-tRNA plasmid system for gene editing in C. tropicalis.

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Presentation transcript:

The pCT-tRNA plasmid system for gene editing in C. tropicalis. The pCT-tRNA plasmid system for gene editing in C. tropicalis. (A) The plasmid shares the main features of the pCP-tRNA system, except that different regulatory elements and a different autonomously replicating sequence are used. The SAT1 gene (nourseothricin resistance) is flanked by a CdTEF1 promoter and a MgPGK1 terminator, and the CAS9 gene is expressed from the M. guilliermondii TEF1 promoter. Autonomously replicating sequence 2 (ARS2) was derived from C. albicans (43, 44). The cassette for the expression of the sgRNA is highlighted in purple on the plasmid map and is represented in more detail in the scheme on the right side. The color coding is the same as in Fig. 1. The only differences from the cassette in Fig. 1B are the promoter (AgTEF1p) and the terminator (ScCYC1t). (B) Editing of CtADE2 using the pCT-tRNA system. The guide gCtADE2.1 was generated by annealing CtAde2.1_gTOP and CtAde2.1_gBOT oligonucleotides (see Table S2 at https://doi.org/10.6084/m9.figshare.7776842) and was cloned into SapI-digested plasmid pCT-tRNA to generate pCT-tRNA-CtADE2.1. Transformation of C. tropicalis Ct46 with pCT-tRNA-CtADE2.1 and the R60-CtADE2-b repair template resulted in the introduction of a stop codon that disrupted the gene function, producing pink auxotrophs. Pink colonies were also observed when cells were transformed with pCT-tRNA-CtADE2.1 without any repair template, presumably due to NHEJ-like repair events (see also Fig. S3 at https://doi.org/10.6084/m9.figshare.7776824). (C) pCT-tRNA-CtADE2.1 is easily lost. Representative pink colonies were patched to YPD plates without nourseothricin (NTC) for 48 h and were then streaked on YPD and YPD plus NTC. Colonies from YPD were repatched after 48 h. All transformants lost NTC resistance after just two passages. (D) The transformants were screened by PCR using the s2CtAde2.1fw primer derived from the edited site and the downstream pCtADE2.1_REV primer, which generates a product only when the mutation is present. (E) Result of PCR screening of 5 representative transformants. WT, Ct46 strain; NC, no DNA. Lisa Lombardi et al. mSphere 2019; doi:10.1128/mSphere.00125-19