Techniques Fusion of ds synthetic oligos to the C terminus of OmpA

Slides:



Advertisements
Similar presentations
CRISPR System Caroline Vrana Davidson College Synthetic Biology Summer 2012.
Advertisements

Synthetic Biology Crash Course DAY ONE. Pre-Assessment 1:00-1:10.
Preparation of competent E. coli cells Preparation of probes by PCR Digestion of pBR322 and plasmid with restrionenzymes BamH1, EcoR1 and EcoRV Purification.
Presented by: Andrew C. Yang 3/30/2011
Week 7 Wednesday: –Screening of library transformants –Innoculation of colonies for plasmid preps –Practice PCR Turn in Lab #11 Thursday: –Plasmid minipreps.
Cling-E. coli : Bacteria on target Harvard iGEM 2007 Ellenor Brown Stephanie Lo Alex Pickett Sammy Sambu Kevin Shee Perry Tsai Shaunak Vankudre George.
[Insert Header Here] [Type Fact #1 Here] [Drag your image on top of this box and resize it using the handles on the edges]
Harvard iGEM 2007 Introduction Cling-E. coli : Bacteria on target Harvard iGEM 2007 Ellenor Brown Stephanie Lo Alex Pickett Sammy Sambu Kevin Shee Perry.
Cling-E. coli : Bacteria on target Harvard iGEM 2007 Ellenor Brown Stephanie Lo Alex Pickett Sammy Sambu Kevin Shee Perry Tsai Shaunak Vankudre George.
Molecular Biology II Lecture 1 OrR. Restriction Endonuclease (sticky end)
Molecular Tools. Recombinant DNA Restriction enzymes Vectors Ligase and other enzymes.
Molecular Cloning.
Todd T. Eckdahl and A. Malcolm Campbell
Cling-E. coli : Bacteria on target Harvard iGEM 2007 Ellenor Brown Stephanie Lo Alex Pickett Sammy Sambu Kevin Shee Perry Tsai Shaunak Vankudre George.
Cling-E. coli : Bacteria on target Harvard iGEM 2007 Ellenor Brown Stephanie Lo Alex Pickett Sammy Sambu Kevin Shee Perry Tsai Shaunak Vankudre George.
IGEM 2007 Cell Surface Re-engineering SKS. Outline Cell surface re-engineering Preliminary Results Back to the Drawing Board Outlook.
Fusion Protein Want to Coat Bacteria with Proteins of Interest Surface Display: Fusions to Membrane Proteins Strept Binding Peptides Histidine Tag Random.
Cling-E. coli : Bacteria on target Harvard iGEM 2007 Ellenor Brown Stephanie Lo Alex Pickett Sammy Sambu Kevin Shee Perry Tsai Shaunak Vankudre George.
[Insert Header Here] [Type Fact #1 Here] [Type Fact #1 Here] [Drag your image on top of this box and resize it using the handles on the edges]
[INSERT HEADER HERE] [Type Fact #1 Here] [Drag your image on top of this box and resize it using the handles on the edges]
Cling-E. coli : Bacteria on target Harvard iGEM 2007 Ellenor Brown Stephanie Lo Alex Pickett Sammy Sambu Kevin Shee Perry Tsai Shaunak Vankudre George.
Sticky Bacteria… Bacteri-adhesive… Cling-E. coli… A working title Perry Tsai June 25, 2007.
Fac. of Agriculture, Assiut Univ.
Directed Mutagenesis and Protein Engineering
hisGFPmek and PDZ domain
Reads aligned into contigs
Cling-E. coli : Bacteria on target
Figure S1 A B The ratio of UMTs/CMTs by averaging every 100 peaks. A. Pol-II data, B. ER data. It showed the ratio is decreasing along the lower level.
Cling-E. coli : Bacteria on target
Gene Editing Design Demo
Cling-E. coli : Bacteria on target
Slide Collection SKS.
Cling-E. coli Let’s get together: Quorum-sensing
Cling-E. coli : Bacteria on target
Engineering the End: DNA Processing at Human Telomeres
Week 1: Tutorial Outline
Overview of Recombinant DNA Techniques
Inferring chromatin organization.
Surface Engineered Bacteria Engineered to Bind and Signal
Quorum Sensing Week 5 Plans.
Digital Gene Expression – Tag Profiling Sample Preparation
Cling-E. coli : Bacteria on target
Volume 17, Issue 5, Pages (October 2016)
OmpA C-Terminus Library
Cling-E. coli : Bacteria on target
Cling-E. coli : Bacteria on target
From genotypes to phenotypes
Cling-E. coli : Bacteria on target
Cling-E. coli : Bacteria on target
Cling-E. coli : Bacteria on target
Cling-E. coli : Bacteria on target
Cling-E. coli : Bacteria on target
Sean A. Lynch, Shawn K. Desai, Hari Krishna Sajja, Justin P. Gallivan 
Cling-E. coli : Bacteria on target
Hyunsuk Suh, Dane Z. Hazelbaker, Luis M. Soares, Stephen Buratowski 
Volume 39, Issue 3, Pages (August 2010)
Kevin M. Marks, Michael Rosinov, Garry P. Nolan  Chemistry & Biology 
The Est3 protein is a subunit of yeast telomerase
(Top) Construction of synthetic long read clouds with 10× Genomics technology. (Top) Construction of synthetic long read clouds with 10× Genomics technology.
USP2a-dependent miRs deregulation modulates MYC expression.
Volume 61, Issue 2, Pages (January 2016)
Cyanobacteria Oscillator
Table 1. Synaptotagmin Project Strains
Cell Surface Reengineering (CSR)
Techniques Fusion of ds synthetic oligos to the C terminus of OmpA
FOR Stage 1 Stage 2 Stage 3 J37015 J37016 J37019 J37020 J37025A
Sean A. Lynch, Shawn K. Desai, Hari Krishna Sajja, Justin P. Gallivan 
FOR Stage 1 Stage 2 Stage 3 J37015 J37016 J37019 J37020 J37025A
Cytokine expression induced by ligated-intestinal-loop assay using RT-PCR. Cytokine expression induced by ligated-intestinal-loop assay using RT-PCR. PCR.
MLK4 Is Required for H2A.Z Deposition and H4 Acetylation.
Presentation transcript:

Techniques Fusion of ds synthetic oligos to the C terminus of OmpA Fusion of ds synthetic oligos to the N terminus of AIDA1 Fusion of tags & randomers to extracellular portion of OmpA loop 1 (loop insertion) Mistake here with AIDA1 – we did not make additions to the C terminus

Fusion of tags to N-terminus of AIDA-1

Fusion at C terminus: Bead Assay (His tag) Pre-assay plates C terminus addition of his to the ompA gene The top shows the plates prior to separation by cobalt beads Bottom is the beads – whish have the bact containing the ompAhis + sender (with RFP) The ratios (1:100) are the dilutions I made prior to the assay – so there is in fact enrichment. Beads

Loop Insertion PCR product digestion & ligation Gene design Primer design Digest-Ligate-Transform motif Gene design Created insertion points for compatible synthetic constructs