Fig. 3 Classification of gene essentiality by transposon mutagenesis.

Slides:



Advertisements
Similar presentations
No natural recombination system present (genes are not expressed) our attempts: Does recombination work in spite of the missing recombination system? Does.
Advertisements

CYB561 mutations. CYB561 mutations. The upper part shows the structure of the CYB561 gene, with the positions of the identified mutations indicated. Gray.
Comparison (θ) of the mean dinucleotide variability distribution for (A) genes with MAE vs. Comparison (θ) of the mean dinucleotide variability distribution.
Comparison (R) of the mean observed to expected dinucleotide distribution for (A) genes with MAE vs. Comparison (R) of the mean observed to expected dinucleotide.
Four design-build-test cycles produced JCVI-syn3.0.
Two New Cases of 1p21.3 Deletions and an Unbalanced Translocation t(8;12) among Individuals with Syndromic Obesity Mol Syndromol 2015;6: DOI: /
Genotypic analysis of genes associated with transmission and drug resistance in the Beijing lineage of Mycobacterium tuberculosis  J-R. Chang, C-H. Lin,
Strategy for CRISPR/Cas9-mediated genome editing in ΔEx50 mice
Pentamer–8I21 Fab and Pentamer–9I6 Fab interactions and structural superpositions. Pentamer–8I21 Fab and Pentamer–9I6 Fab interactions and structural superpositions.
Figure Pedigree of the family
Genomic rearrangements of E
Supplemental Figure 3 A B C T-DNA 1 2 RGLG1 2329bp 3 T-DNA 1 2 RGLG2
Molecular cloning of pms916 salt hypersensitive T-DNA mutant.
Identification of essential genome features.
Venn diagram of blaKPC-containing plasmids detected in the environment and patients. Venn diagram of blaKPC-containing plasmids detected in the environment.
Phylogenetic tree of perA A2-domain DNA sequence.
Comparison of the variable regions of (A) pHNZY32, pHNZY118, and pHNAH24; (B) pHNMCC14; (C) pHNFKU92; (D) pE80; (E) pECB11; (F) p42-2; and (G) pSLK172-2.
Human Genomic Deletions Mediated by Recombination between Alu Elements
Crystal structure of HCMV Pentamer.
Analysis of Pentamer interfaces.
Fig. 1 Movement percepts for all participants.
Organization of TCAST elements within T
Fig. 4 Sequence divergence based on RAD sequences in five scaffolds containing genital QTL candidate genes between parapatric species with diverged genital.
Fig. 2. Clinically actionable somatic genomic alterations in various tumor types. Clinically actionable somatic genomic alterations in various tumor types.
Fig. 4 Gene disruption via chip.
Fig. 7 Bacterial dependency networks in IgA deficiency and HDs.
Fig. 2 Overview of transcriptional mutagenesis in yeast.
Structural Variations of the Kala4 Promoters in 21 Black Rice Varieties.The Kala4 promoters of 21 black rice varieties were classified into three types.
Fig. 2 Quantification and mechanisms leading to the CAH for reentrant and doubly reentrant geometries at zero applied pressure. Quantification and mechanisms.
Fig. 4 Reentrant and doubly reentrant transition state analysis.
Multiplexed Mutagenesis Using the Csy4 System in Tomato Protoplasts.
Fig. 4 Twist grain boundary free energies as a function of misalignment angle for the (110)-(100) crystal planes of a nanocrystal with 1135 atoms. Twist.
Fig. 2 Stratigraphic profile of the Area 15 excavation block showing the diagnostic cultural materials and components alongside the stratigraphic sequence.
Fig. 1 Study area and field site setting.
Fig. 1 Bioinspired design of AAD for promoting wound contraction.
Fig. 3 The rs risk enhancer is a hub for intrachromosomal and interchromosomal interactions. The rs risk enhancer is a hub for intrachromosomal.
Fig. 3 Near-infrared spectrum of EM at 4.5 days after merger.
Fig. 1 Two-dimensional, hierarchically buckled sheath-core fibers.
Fig. 4 EUV TG signal from Si.
Evolution of photosynthesis and aerobic respiration in Cyanobacteria
Genomic Sequence of Ufo1-1 Reveals a Novel CACTA Transposon Insertion in the Candidate Gene. Genomic Sequence of Ufo1-1 Reveals a Novel CACTA Transposon.
AEGIS autonomous targeting process.
Fig. 5 Active-state hallmarks of US28 bound to CX3CL1.
Fig. 3 ET dynamics on the control and treatment watersheds during the pretreatment and treatment periods. ET dynamics on the control and treatment watersheds.
Fig. 3 Phylogenetic pattern of NFN symbiosis–related genes.
Fig. 1 Most models of biological responses to climate change omit important biological mechanisms. Most models of biological responses to climate change.
Fig. 1 Exon 44–deleted DMD patient iPSC-derived cardiomyocytes express dystrophin after CRISPR-Cas9–mediated genome editing. Exon 44–deleted DMD patient.
Formation of complex antibiotic resistance regions.
Chromosomal maps of three M
Analysis of A-to-I RNA edits found in transcriptome-wide RNA-seq
Fig. 4 Relationships between light and economic parameters.
Fig. 5 Loss of SSU72 function results in early flowering.
Fig. 1 Study design and antibody pharmacokinetics.
Delineating cancer evolution with single-cell sequencing
Fig. 3 Maximal energy intake.
Fig. 3 Comparisons of NDVI trends over the globally vegetated areas from 1982 to Comparisons of NDVI trends over the globally vegetated areas from.
Fig. 4 The three DBT cycles involved in building syn3.0.
Evolution of CRISPR-Cas systems resulted in incredible structural and functional diversity. Evolution of CRISPR-Cas systems resulted in incredible structural.
Fig. 5 Foxp3 promotes functional recruitment of Bcl11b in Treg cells.
Fig. 2 Growth kinetics of borophene on silver.
Driver pathways and key genes in OSCC
Integrated analysis of gene expression and copy number alterations.
The combined signal spectra of PSD for protons and helium nuclei
Fig. 1. Schematic description of whole-exome or targeted next-generation sequencing analyses. Schematic description of whole-exome or targeted next-generation.
Fig. 4 Scaling laws distinguish biochemical networks from random networks across levels of organization. Scaling laws distinguish biochemical networks.
Fig. 2 Spatial distribution of five city groups.
Examples of essential genes as determined by Tn-seq.
Fig. 5 Schematics illustrating enhancement in April tornado activity due to SST. Schematics illustrating enhancement in April tornado activity due to SST.
Fig. 3 Genome editing of the MSTN gene.
Fig. 1. Maps of Lesotho, a landlocked country within South Africa.
Presentation transcript:

Fig. 3 Classification of gene essentiality by transposon mutagenesis. Classification of gene essentiality by transposon mutagenesis. (A)Examples of the three gene classifications, based on Tn5 mutagenesis data. The region of syn1.0 from sequence coordinates 166,735 to 170,077 is shown. The gene MMSYN1_0128 (lime arrow) has many P0 Tn5 inserts (black triangles) and is an i-gene (quasi-essential). The next gene, MMSYN1_0129 (light blue arrow), has no inserts and is an e-gene (essential). The last gene, MMSYN1_0130 (gray arrow), has both P0 (black triangles) and P4 (magenta triangles) inserts and is an n-gene (nonessential). Intergenic regions are indicated by black lines. (B)The number of syn1.0 genes in each Tn5-mutagenesis classification group. The n- and in-genes are candidates for deletion in reduced genome designs. Clyde A. Hutchison III et al. Science 2016;351:aad6253 Copyright © 2016, American Association for the Advancement of Science