The log-transformed reporter Z scores of the metabolic pathways showing significant differences between the PCOS and control groups. The log-transformed.

Slides:



Advertisements
Similar presentations
ΜΕΤΑΣΥΛΛΕΚΤΙΚΗ ΦΥΣΙΟΛΟΓΙΑ ΕΡΓΑΣΤΗΡΙΟ 3. Μετασυλλεκτική Εργ3-Λιοσάτου Γ.2 ΒΙΟΛΟΓΙΚΟΙ ΠΑΡΑΓΟΝΤΕΣ ΠΟΥ ΕΠΗΡΕΑΖΟΥΝ ΤΗ ΦΘΟΡΑ ΤΩΝ ΟΠΩΡΟΚΗΠΕΥΤΙΚΩΝ Αναπνοή Η λειτουργία.
Advertisements

Additional file 6. Gene Ontology (GO) term “enrichment status” for the pollen stage down regulated genes in MPGs and GPGs. A, term enrichment levels along.
Time-Course Network Enrichment
Cladogram presenting a hierarchical overview of the MetaCyc pathways detected in the kefir microbiome with HUMAnN2. Cladogram presenting a hierarchical.
Schematic representation of investigation into microbial diversity, interactions, and metabolic activity using a combined meta-omic and enrichment culture.
Behaviorally dependent allele-specific expression.
Figure S1: Gene importance plot derived from Variable/ Feature selection using machine learning on the training dataset. MeanDecreaseGini is the measure.
اثرات گرمايش جهاني تغييرات آب و هوا، تأثيرات عميق و شديدي بر بسياري از عوامل اساسي موثر بر سلامت از جمله : آب، غذا، هوا و محيط زيست دارد كه اين مورد خود.
Cooccurrence network for dolphin rectum microbiome.
Heatmap displaying consistent similarity-based OTU results based on SIMPER intragroup similarity analyses for the tissue, mucus, holobiont, and seawater.
Quantification of the significantly changed metabolites.
Analysis of changes in the host metabolome during M
Modules with causal links to ALS are associated with inflammation and enriched with TDP‐43 protein–protein interactions (PPIs)‏ Modules with causal links.
Formula feeding affects the resistome.
Construction and analysis of the HEV-host PPI network.
ADAGE model example. ADAGE model example. For one sample in the expression compendium (one column in the figure with red or green colors, representing.
(a) Bifurcating tree generated from hierarchical clustering of OTUs based on mean pH. (a) Bifurcating tree generated from hierarchical clustering of OTUs.
Metabolic pathway changes of intracellular M. tuberculosis.
Plots of the number of sequences [log (x + 1) scale] from bacterial OTUs in both PCR replicates (PCR1 and PCR2) of the 348 wild rodents analyzed in the.
Taxonomic composition of the baboon and human gut microbiota.
Correlation between abundances of butyrate-forming pathways (A), of terminal enzymes linked to the acetyl-CoA pathway (B), and of all individual taxa harboring.
Succession of the butyrate-producing community after birth.
The protein-protein interaction (PPI) network of four habitats, i. e
(a) Correspondence analysis of 88 soil samples.
Meta-analysis of the Listeriomics transcriptomic data sets.
Transcription levels of metabolic pathways and genes in mother and infant pair 4 at time point 2. Transcription levels of metabolic pathways and genes.
Correlation of mouse gene expression with bacterial gene expression.
Systematic analysis of host-pathogen interactions.
Presence of motifs correlated with decreased expression of downstream genes. Presence of motifs correlated with decreased expression of downstream genes.
Genes affected concordantly within the ileum and meta-analysis data sets formed biofunctional clusters of overlapping pathways. Genes affected concordantly.
Classification accuracy for each taxon at different ranks of the NCBI taxonomy. Classification accuracy for each taxon at different ranks of the NCBI taxonomy.
Enrichment of members of KEGG Orthology (KOs) families across MBTA surfaces before and after P. acnes removal. Enrichment of members of KEGG Orthology.
Statistical comparison of metabolites and analysis of differential metabolites and key metabolic pathways. Statistical comparison of metabolites and analysis.
miRNA target pathways correlated with CRC-associated bacteria.
Gene-wise Tajima’s D values and gene lengths.
Pairwise analysis of detected virus taxonomy prior to and following intervention. Pairwise analysis of detected virus taxonomy prior to and following intervention.
Colonopshere-enriched proteins display functional interactions.
Bacteria significantly correlated with DE miRNAs.
Altered pathways in prostate cancer.
Phenotype gain and loss dynamics match protein family dynamics.
Functional enrichment of differentially expressed genes.
PICRUSt analysis results of predicted functional pathways in the gut microbiota. PICRUSt analysis results of predicted functional pathways in the gut microbiota.
Multilayered cooccurrence network analysis of OTUs that exhibited a significant positive Spearman’s correlation with oxalate consumption at the end of.
Pathway analysis of genes upregulated after RSV infection.
Metabolite predictability across metabolic categories (A) and disease states (B) in the vaginal microbiome. Metabolite predictability across metabolic.
Metabolite predictability is consistent between vaginal and mouse cecal data sets. Metabolite predictability is consistent between vaginal and mouse cecal.
Trends in metabolite predictability in terms of key gene contributors.
Many of the diseases associated with high coevolution scores share genetic components. Many of the diseases associated with high coevolution scores share.
Label frequency and average enrichment of taxa.
Framework for integrating taxonomic and metabolomic data.
Enrichment of microbial functions with elevated triclosan.
Treatment with DM-α-KG rescues gene expression in the context of chronic mtDNA depletion. Treatment with DM-α-KG rescues gene expression in the context.
PKS distribution. PKS distribution. (A) Network map for known (purple) and unknown (yellow) PKS clusters, with the cluster number at each node and the.
Functional potential analyses.
Ingenuity pathway analysis of the genes enriched in both 96-h-induced MMs and human ccRCC. Ingenuity pathway analysis of the genes enriched in both 96-h-induced.
Fig. 4. The model of malate metabolism in fruit cells under different K level conditions. The model of malate metabolism in fruit cells under different.
Box plots displaying the median, minimum, maximum, and first and third quartiles of the percentage of the 25 members of the core microbiome detected in.
Reanalysis of an existing experiment using ADAGE
Relative growth of transcription factor knockout mutants on different sulfur sources. Relative growth of transcription factor knockout mutants on different.
Heatmaps reveal significantly affected pathways by 4 mg/liter polymyxin B (PMB) in strains PAK and PAKpmrB6 at 1 h using transcriptomics. Heatmaps reveal.
Differences in Verrucomicrobia genera across plant community types.
Schematic depicting the Gcn5-regulated metabolic pathways.
Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;
The correlation network constructed using the identified metagenomic species (MGS), metabolic parameters (including TGs, TC, and FPG), SCFAs (including.
Most mutations were nonsynonymous, especially at the nodes of new clades, with affected genes encoding regulatory functions, lipid metabolism, and envelope.
Enrichment of KEGG pathways in microbial genes in different samples.
Dynamic changes in the levels of sex hormones (panel A for LH and panel B for LH/FSH), brain-gut mediators (panel C for ghrelin and panel D for PYY), and.
KEGG categories of host DEGs (up- and downregulated genes) enriched at selected points after φAbp1 infection. KEGG categories of host DEGs (up- and downregulated.
Pathway-based analysis of the differentially expressed proteins in colonic mucosa. Pathway-based analysis of the differentially expressed proteins in colonic.
Differences in tumour cell metabolism and cytokine/chemokine expression among the three HCC subtypes. Differences in tumour cell metabolism and cytokine/chemokine.
Presentation transcript:

The log-transformed reporter Z scores of the metabolic pathways showing significant differences between the PCOS and control groups. The log-transformed reporter Z scores of the metabolic pathways showing significant differences between the PCOS and control groups. The green nodes represent the metabolic pathways (in level 3) enriched in the control group (CO), and the pink nodes represent the metabolic pathways (in level 3) enriched in the PCOS group (PCOS). The node size represents the changed score. The metabolic pathways in level 2 are displayed in different colors. CoA, coenzyme A. Jiachao Zhang et al. mSystems 2019; doi:10.1128/mSystems.00017-19