OHDSI Vocabulary Development and Release Process

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Presentation transcript:

OHDSI Vocabulary Development and Release Process 1

Prioritization & Funding OHDSI Vocabulary Management New Vocab. Request Prioritization & Funding Estimate Effort Plan & Schedule Demand Integrate Vocabulary Obtain Data Perform Testing Publish into ATHENA Development Create New Vocabulary Obtain New Data Feed Update Mappings Perform Testing Publish into ATHENA Support & Maintenance Raise Issue in GitHub Fix Mappings Perform Testing Publish into ATHENA User / Requestor OHDSI Vocabulary Team

Raising Requests http://forums.ohdsi.org https://github.com/OHDSI/Vocabulary-v5.0/issues

Discussing details http://forums.ohdsi.org

Release announcement http://forums.ohdsi.org

Documentation http://www.ohdsi.org/web/wiki/doku.php?id=documentation:vocabulary

Github repository https://github.com/OHDSI/Vocabulary-v5.0/issues

Athena search page http://athena.ohdsi.org/search-terms/terms

Athena download page http://athena.ohdsi.org/vocabulary/list

Release notes https://github.com/OHDSI/Vocabulary-v5.0/releases/

What was done lately and what we are going to do

Procedure domain done: ICD9Proc, OPCS4, ICD10PCS, HCPCS upcoming OPS – we are working on them using ICD10PCS approach CPT4 – no attributes defined, needs investigation The same principles as for ICD10PCS are used

Drug domain Done: Added: JMDC - Japan Medical Data Center Drug Code (JMDC) KDC - Korean Drug Code (HIRA) Improved: dm+d, Gemscript, GGR, BDPM, DPD, AMT, HCPCS drugs, added missing NDC concepts and missing mappings

Drug domain Upcoming additions European drug vocabularies - article 57 database HemOnc as a Oncology Drug Regimen vocabulary improvements CVX - it needs better hierarchy ATC - it still gaps and some ambiguity NDC - still has gaps make drug vocabularies updates as much as possibly automated

Condition domain Added: SNOMED Veterinary Improved: ICD9CM, ICD10CM, ICD10, ICDO

Multiple domains Done More accurate domain assignment for LOINC, MedDRA, SNOMED Upcoming NAACCR as a Cancer Registry source vocabulary https://github.com/OHDSI/OncologyWG/issues Genomic vocabularies http://forums.ohdsi.org/t/genomic-data-in-the-cdm/3483 https://github.com/OHDSI/Genomic-CDM SNOMED Extension allowing to map conditions flawlessly

Structural changes done: - Outdated HCPCS and CPT4 remain standard if they don't have replacement, as these concepts existed in the patient data and still need to be represented in CDM to do: make ATC concepts standard support concepts changing their meaning over time (HCPCS, NDC, DRG) We’ll discuss this on the next CDM workgroup; see forum threads: http://forums.ohdsi.org/t/hcpcs-codes-change-their-meaning-over-time/6182 http://forums.ohdsi.org/t/ndcs-changing-over-time/903  http://forums.ohdsi.org/t/drg-codes-change-their-meaning-over-time/6529 

Other gaps and improvements Improvement - more automation is needs to be added for refreshes Opportunity - Better collaboration and curation capabilities with web- based interfaces that do not require deep SQL and database structure knowledge (for example, the mapping tool from France?) Improvement - how to better enable accepting external contributions (see new OHDSI process proposed by Patrick R. on http://forums.ohdsi.org/t/a-proposal-for-maturing-our-open- community-development-activities/6728/1) Improvement - more streamlined and consistent release process Opportunity - enabling the diff between new and previous vocab releases with Tantalus https://github.com/OHDSI/Tantalus