Identification of PVM candidates by quantitative mass spectrometry.

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Identification of PVM candidates by quantitative mass spectrometry. Identification of PVM candidates by quantitative mass spectrometry. A volcano plot depicting quantified proteins is shown. The x axis shows the average fold change (log2) in protein abundance in EXP1-BirA*-V5 samples in comparison to WT controls, and the y axis shows the average adjusted (adj.) P value; the data for both were determined on the basis of results from two independent experiments. Proteins meeting the selection criteria (for details, see the main text) and considered significantly enriched in EXP1-BirA*-V5 parasites are displayed in yellow. The bait protein (EXP1; PBANKA_0926700) and candidates selected for further localization studies are highlighted in red. For a complete list of all identified proteins, see Table S1; for a Venn diagram showing the overlap of the data from the two independent experiments, see Fig. S2. Proteins significantly enriched in EXP1-BirA*-V5 parasites and containing a signal peptide and/or at least one transmembrane domain are displayed and further described in Fig. 3 (see also Table S2). Cilly Bernardette Schnider et al. mSphere 2018; doi:10.1128/mSphere.00522-17