Yuqing Huang, Shuhui Cai, Zhiyong Zhang, Zhong Chen 

Slides:



Advertisements
Similar presentations
How Do Thermophilic Proteins and Proteomes Withstand High Temperature? Lucas Sawle, Kingshuk Ghosh Biophysical Journal Volume 101, Issue 1, Pages
Advertisements

Counter-Intuitive Stochastic Behavior of Simple Gene Circuits with Negative Feedback Tatiana T. Marquez-Lago, Jörg Stelling Biophysical Journal Volume.
Structure and Dynamics of ER: Minimal Networks and Biophysical Constraints Congping Lin, Yiwei Zhang, Imogen Sparkes, Peter Ashwin Biophysical Journal.
Tryptophan-Lipid Interactions in Membrane Protein Folding Probed by Ultraviolet Resonance Raman and Fluorescence Spectroscopy Katheryn M. Sanchez, Guipeun.
Molecular Model of a Cell Plasma Membrane With an Asymmetric Multicomponent Composition: Water Permeation and Ion Effects Robert Vácha, Max L. Berkowitz,
Yield Strength of Human Erythrocyte Membranes to Impulsive Stretching Fenfang Li, Chon U Chan, Claus Dieter Ohl Biophysical Journal Volume 105, Issue 4,
X-Ray Absorption Spectroscopy of Dinuclear Metallohydrolases David L. Tierney, Gerhard Schenk Biophysical Journal Volume 107, Issue 6, Pages
Lever-Arm Mechanics of Processive Myosins Yujie Sun, Yale E. Goldman Biophysical Journal Volume 101, Issue 1, Pages 1-11 (July 2011) DOI: /j.bpj
The Importance of the Hook Region of the Cochlea for Bone-Conduction Hearing Namkeun Kim, Charles R. Steele, Sunil Puria Biophysical Journal Volume 107,
The Interrelations among Stochastic Pacing, Stability, and Memory in the Heart Hila Dvir, Sharon Zlochiver Biophysical Journal Volume 107, Issue 4, Pages.
Cell Traction Forces Direct Fibronectin Matrix Assembly Christopher A. Lemmon, Christopher S. Chen, Lewis H. Romer Biophysical Journal Volume 96, Issue.
Quantifying the Rheological and Hemodynamic Characteristics of Sickle Cell Anemia Huan Lei, George Em Karniadakis Biophysical Journal Volume 102, Issue.
Nonlinear Poisson Equation for Heterogeneous Media Langhua Hu, Guo-Wei Wei Biophysical Journal Volume 103, Issue 4, Pages (August 2012) DOI: /j.bpj
Direct Measurements of the Mechanical Stability of Zinc-Thiolate Bonds in Rubredoxin by Single-Molecule Atomic Force Microscopy Peng Zheng, Hongbin Li.
Dynamic Molecular Structure of DPPC-DLPC-Cholesterol Ternary Lipid System by Spin- Label Electron Spin Resonance  Yun-Wei Chiang, Yuhei Shimoyama, Gerald.
Volume 96, Issue 8, Pages (April 2009)
Volume 111, Issue 7, Pages (October 2016)
High-Density 3D Single Molecular Analysis Based on Compressed Sensing
Volume 112, Issue 11, Pages (June 2017)
Anisotropy Induced by Macroscopic Boundaries: Surface-Normal Mapping using Diffusion-Weighted Imaging  Evren Özarslan, Uri Nevo, Peter J. Basser  Biophysical.
Volume 98, Issue 9, Pages (May 2010)
Volume 107, Issue 10, Pages (November 2014)
Volume 108, Issue 1, Pages (January 2015)
Molecular Orientation and Conformation of Phosphatidylinositides in Membrane Mimetics Using Variable Angle Sample Spinning (VASS) NMR  Anita I. Kishore,
Solid-State NMR Characterization of Gas Vesicle Structure
Volume 107, Issue 10, Pages (November 2014)
Volume 101, Issue 6, Pages (September 2011)
Verena Hoerr, Armin Purea, Cornelius Faber  Biophysical Journal 
Sapun H. Parekh, Young Jong Lee, Khaled A. Aamer, Marcus T. Cicerone 
Orientation of the Infrared Transition Moments for an α-Helix
Shear-Induced Unfolding of Lysozyme Monitored In Situ
Carlos R. Baiz, Andrei Tokmakoff  Biophysical Journal 
Nanopore Sequencing: Forcing Improved Resolution
Marc Jendrny, Thijs J. Aartsma, Jürgen Köhler  Biophysical Journal 
Linas Urnavicius, Scott A. McPhee, David M.J. Lilley, David G. Norman 
Michael Adrian, Fernaldo Richtia Winnerdy, Brahim Heddi, Anh Tuân Phan 
Volume 106, Issue 6, Pages (March 2014)
Volume 108, Issue 6, Pages (March 2015)
Anil K. Dasanna, Christine Lansche, Michael Lanzer, Ulrich S. Schwarz 
Tracking Phospholipid Populations in Polymorphism by Sideband Analyses of 31P Magic Angle Spinning NMR  Liam Moran, Nathan Janes  Biophysical Journal 
Volume 108, Issue 7, Pages (April 2015)
Volume 110, Issue 11, Pages (June 2016)
Y. Qiao, P. Galvosas, P.T. Callaghan  Biophysical Journal 
Carlos R. Baiz, Andrei Tokmakoff  Biophysical Journal 
Ivan V. Polozov, Klaus Gawrisch  Biophysical Journal 
Cell Optical Density and Molecular Composition Revealed by Simultaneous Multimodal Label-Free Imaging  Nicolas Pavillon, Alison J. Hobro, Nicholas I.
SAXS-Oriented Ensemble Refinement of Flexible Biomolecules
Rong-juan Feng, Lu Lin, Yi-yi Li, Ming-hua Liu, Yuan Guo, Zhen Zhang 
Extruding Loops to Make Loopy Globules?
Volume 107, Issue 10, Pages (November 2014)
Spatial Distribution of the State of Water in Frozen Mammalian Cells
Volume 106, Issue 2, Pages (January 2014)
Lipid Headgroups Modulate Membrane Insertion of pHLIP Peptide
Volume 93, Issue 1, Pages (July 2007)
Volume 114, Issue 7, Pages (April 2018)
Volume 106, Issue 10, Pages (May 2014)
Interbeat Interval Modulation in the Sinoatrial Node as a Result of Membrane Current Stochasticity—A Theoretical and Numerical Study  Hila Dvir, Sharon.
K.J. Tielrooij, D. Paparo, L. Piatkowski, H.J. Bakker, M. Bonn 
P. Müller-Buschbaum, R. Gebhardt, S.V. Roth, E. Metwalli, W. Doster 
Volume 111, Issue 7, Pages (October 2016)
Volume 99, Issue 12, Pages (December 2010)
Volume 107, Issue 4, Pages (August 2014)
Huan-Xiang Zhou, Osman Bilsel  Biophysical Journal 
Volume 78, Issue 1, Pages (January 2000)
Volume 74, Issue 5, Pages (May 1998)
Systems Biophysics: Multiscale Biophysical Modeling of Organ Systems
Anil K. Dasanna, Christine Lansche, Michael Lanzer, Ulrich S. Schwarz 
Volume 109, Issue 7, Pages (October 2015)
Volume 76, Issue 1, Pages (January 1999)
Emmanuel O. Awosanya, Alexander A. Nevzorov  Biophysical Journal 
Presentation transcript:

High-Resolution Two-Dimensional J-Resolved NMR Spectroscopy for Biological Systems  Yuqing Huang, Shuhui Cai, Zhiyong Zhang, Zhong Chen  Biophysical Journal  Volume 106, Issue 9, Pages 2061-2070 (May 2014) DOI: 10.1016/j.bpj.2014.03.022 Copyright © 2014 Biophysical Society Terms and Conditions

Figure 1 Pulse diagram of the iDQCJRES sequence for high-resolution 2D J-resolved spectra in inhomogeneous fields. WS is the module for solvent suppression, and Localization is the optional module for spatial localization. Related parameters are defined in text. Biophysical Journal 2014 106, 2061-2070DOI: (10.1016/j.bpj.2014.03.022) Copyright © 2014 Biophysical Society Terms and Conditions

Figure 2 Shearing process for 3D iDQCJRES data of butyl methacrylate in DMSO with 200 Hz field inhomogeneity. (a) Original 3D spectrum before shearing. The streaks are parallel to the F1-F3 plane and perpendicular to the F2 dimension. (b) Sheared 3D spectrum. The streaks stretch along the F1 dimension and are perpendicular to the F2-F3 plane, so a high-resolution 2D J-resolved spectrum can be constructed through 2D projection onto the F2-F3 plane (gray-shaded plane). To see this figure in color, go online. Biophysical Journal 2014 106, 2061-2070DOI: (10.1016/j.bpj.2014.03.022) Copyright © 2014 Biophysical Society Terms and Conditions

Figure 3 2D J-resolved spectra of butyl methacrylate in DMSO. Two regions marked I and II, containing peaks at 5.56 ppm and 1.32 ppm, respectively, are expanded for all 2D spectra. (a) Conventional J-resolved spectrum in a well-shimmed field and its projection along the F2 axis. The truncated peak marked with an asterisk is the solvent peak. (b) Conventional J-resolved spectrum acquired in an inhomogeneous field with a line width of 200 Hz. (c) iDQCJRES 2D projection spectrum along the F3 axis in the same inhomogeneous field as in b. (d) iDQCJRES 2D projection spectrum after a clockwise rotation of the image in c by 45° along F2 = 0. To see this figure in color, go online. Biophysical Journal 2014 106, 2061-2070DOI: (10.1016/j.bpj.2014.03.022) Copyright © 2014 Biophysical Society Terms and Conditions

Figure 4 NMR results of pig brain tissues fitted in a 5-mm NMR tube. (a) Conventional 1D spectrum and the expanded region for metabolites. (b) 1D water-presaturated MAS spectrum acquired using a Nano probe. (c) Conventional 2D water-presaturated J-resolved spectrum after a clockwise rotation of 45° and its projection along the F2 axis. (d) Processed 2D iDQCJRES spectrum and its 1D J-decoupled projection along the F3 axis. To see this figure in color, go online. Biophysical Journal 2014 106, 2061-2070DOI: (10.1016/j.bpj.2014.03.022) Copyright © 2014 Biophysical Society Terms and Conditions

Figure 5 Postmortem studies of an intact fish (Crossocheilus siamensis). (a) Sagittal and axial spin-echo images with a marked voxel (4 × 4 × 13 mm3). (b) Conventional 1D spectrum and the expanded region for metabolites. (c) 2D JPRESS spectrum; (d) 2D iDQCJRES spectrum with assigned metabolites. To see this figure in color, go online. Biophysical Journal 2014 106, 2061-2070DOI: (10.1016/j.bpj.2014.03.022) Copyright © 2014 Biophysical Society Terms and Conditions