Figure 2. Model adequacy results for the two empirical data sets, West African Ebola, and 2009 H1N1 influenza. The ... Figure 2. Model adequacy results.

Slides:

Advertisements

Similar presentations

Fig. 8 The two cases for the terminal edge e<sub>0</sub>

Advertisements

FIG. 2.— Phylogenetic tree and divergence time estimates for mtDNA sequences of Przewalski's and domestic horses. The results of analysis carried out in.

J Exp Bot. 2017;68(17): doi: /jxb/erx352

Figure 1. Circular taxonomy tree based on the species that were sequenced in our study. Unless provided in the caption above, the following copyright applies.

Figure 4 Change in plaque burden, plaque area, and plaque composition according to wall shear stress. (A and B) Change ... Figure 4 Change in plaque burden,

Figure 1. Overview of the workflow of NetworkAnalyst 3.0.

Figure 1 The study area within Vienna Zoo is outlined in red

Unless provided in the caption above, the following copyright applies to the content of this slide: Published by Oxford University Press on behalf of the.

Figure 1 Top: Annual modal paternity distance (PDc) estimated for each of 23 cohorts by MasterBayes ... Figure 1 Top: Annual modal paternity distance (PDc)

Figure 1 Study area in Northern Wisconsin, USA, where we simulated the dispersal of 15 translocated American martens ... Figure 1 Study area in Northern.

Figure 1: Axial T2 W images of penis showed a well-defined septated area of 2 cm in the posterior aspect of ... Figure 1: Axial T2 W images.

Figure 1 Flow diagram detailing the systematic review process.

FIGURE 1 Histological diagnoses divided into 8-year time frames (n = 1208). Unless provided in the caption above, the following copyright applies to the.

FIGURE 1 The effect of daprodustat on hemoglobin (Hgb) levels

Figure 1 The process of bone defect creation, implant insertion and ridge augmentation. (a) Creation of standardized ... Figure 1 The process of bone defect.

FIGURE 2 Responses to the question: regarding vasoactive drugs, does your centre use the following frequently, rarely ... FIGURE 2 Responses to the question:

FIGURE 1 Maternal (A) urinary aldosterone; (B) plasma active renin; (C) urinary AGT concentrations; and (D) plasma AGT ... FIGURE 1 Maternal (A) urinary.

Figure 1. Schematic illustration of CSN and NDM construction and our statistic model. (A) CSN and NDM construction. (i) ... Figure 1. Schematic illustration.

Figure 1. Ratios of observed to expected numbers of exon boundaries aligning to boundaries of domain and disorder ... Figure 1. Ratios of observed to expected.

Figure 1. autoMLST workflow depicting placement and de novo mode

Unless provided in the caption above, the following copyright applies to the content of this slide: Published by Oxford University Press on behalf of the.

Figure 1. Comparison of weighted estimates of diarrhoea prevalence in children under five by country between PMA Figure 1. Comparison of weighted.

Fig. 1 Kaplan-Meier plot of cumulative incidence of cancer onset following dermatomyositis diagnosis stratified ... Anti-TIF1-Ab: anti-transcriptional.

Figure 1. Chemical structures of DNA and tc-DNA

Fig. 1 Mean change from baseline in ANC ± s. e

Point estimates with ... Point estimates with 95% CI. HR: hip replacement; KR: knee replacement. Unless provided in the caption above, the following copyright.

FIGURE 1 Participant flow diagram. Exercise Counseling Clinic (ECC).

Fig. 1 Flow chart of included patients for analyses

Figure 1. Analysis of human TRIM5α protein with Blast-Search and PhyML+SMS ‘One click’ workflow. (A) NGPhylogeny.fr ... Figure 1. Analysis of human TRIM5α.

Figure 2. Natural history of chlamydia transmission, with arrows showing the transitions between health states. Figure 2. Natural history of chlamydia.

Fig. 1 Flow chart for selection of study subjects

Figure 1. Mean concentration–time profiles of ascending doses of ivermectin in (a) PSAC and (b) SAC. Weight-dependent ... Figure 1. Mean concentration–time.

Figure 1 Nelson-Aalen estimates of the cumulative incidence rates for patients on versus off IST. ON = optic neuritis; ... Figure 1 Nelson-Aalen estimates.

FIGURE 1 Malta: a plate-style food guide

Figure 1. A, Crude incidence rates per 100 person-years of follow-up and 95% confidence intervals for each solid organ ... Figure 1. A, Crude incidence.

FIGURE 1 Study consort diagram

Fig. 2 Case 2. Levels of serum creatinine and anti-GBM antibodies before and during treatment with cyclophosphamide, ... Fig. 2 Case 2. Levels of serum.

Unless provided in the caption above, the following copyright applies to the content of this slide: Published on behalf of the European Society of Cardiology.

Figure 1. Illustration of DGR systems and their prediction using myDGR

FIGURE 1 Food groups consumed (mean, g/d) among US infants and young children by age group and tertile of mean ... FIGURE 1 Food groups consumed (mean,

Figure 1: Predicted probability of nest presence (0 = no nest and 1 = nest present) in response to canopy cover for ... Figure 1: Predicted probability.

Figure 1. Using Voronoi tessellation to define contacts

Fig. 1. iS-CellR pipeline overview

Figure 4. RLS spectra of (A) TMPipEOPP and (B) OMHEPzEOPP in the presence of different concentrations of KRAS. The RLS ... Figure 4. RLS spectra of (A)

Figure 1. Uncertainty reduction, value creation, and appropriation in two case studies. Unless provided in the caption above, the following copyright applies.

Figure 1. The configuration menu allows the user to choose among the main visualization/processing options of the ... Figure 1. The configuration menu.

Unless provided in the caption above, the following copyright applies to the content of this slide: Published by Oxford University Press on behalf of the.

Figure 1. MERMAID web server interface (Start page, Parameter page): MERMAID provides two ways to submit a protein ... Figure 1. MERMAID web server interface.

Figure 1. The framework of NetGO with seven steps

Figure 1 Patient disposition

Fig. 1. —Synteny analysis of melon chromosome 1 (brown) and cucumber chromosome 7 (green) based on melon-cucumber ... Fig. 1. —Synteny analysis of melon.

Figure 4. Healthcare utilization for paediatric diarrhoea by caregivers. Pyramid plot showing the number and ... Figure 4. Healthcare utilization for paediatric.

Figure 1 Distribution of WCD use days in WEARIT-II

Fig. 2. —Phylogenetic relationships and motif compositions of some representative MORC genes in plants and animals. ... Fig. 2. —Phylogenetic relationships.

Figure 1 Correlation between en face Oil-Red O staining and aortic root lesion size vs. plasma cholesterol and ... Figure 1 Correlation between en face.

Figure 1. Excess cost of methicillin-resistant Staphylococcus aureus (MRSA) compared with methicillin-susceptible S. ... Figure 1. Excess cost of methicillin-resistant.

Figure 1 Genetic results. No case had more than one diagnostic result

Figure 1. (A) Baseline contrast-enhanced CT scan of melanoma patient presenting with metastases in the liver and lymph ... Figure 1. (A) Baseline contrast-enhanced.

Figure 1. Prevalence of parasitic infection and anemia among the children. Unless provided in the caption above, the following copyright applies to the.

Fig. 1. —OR gene tree including 2,973 genes from seven ants, honeybee, and jewel wasp. The tree was reconstructed ... Fig. 1. —OR gene tree including 2,973.

Figure 1. Illustration of aggregation functions on the local network of 1-decene. 1-decene is marked as target. ... Figure 1. Illustration of aggregation.

Figure 1. GWAS Catalog associations for coronary artery disease plotted across all chromosomes. Associations added ... Figure 1. GWAS Catalog associations.

Figure 2. Performance of penalized likelihood for the estimation of the variance covariance matrix and comparison with ... Figure 2. Performance of penalized.

Figure 1 Mechanisms of mitral regurgitation.

Fig. 1. —GO categories enriched in gene families showing high or low omega (dN/dS) values for Pneumocystis jirovecii. ... Fig. 1. —GO categories enriched.

Fig. 2. Genetic differentiation among populations and individuals

Figure 1. Unrooted phylogenetic trees for UL73 and UL74 based on amino acid sequences derived from 243 genome ... Figure 1. Unrooted phylogenetic trees.

Fig. 1. Examples of plots of NanoPlot and NanoComp

Figure 1 ABCDE of primary prevention.2

Fig. 1. A graphical representation of the GGDNA workflow used to identify each single expressed TE transcript from ... Fig. 1. A graphical representation.

Presentation transcript:

Figure 2. Model adequacy results for the two empirical data sets, West African Ebola, and 2009 H1N1 influenza. The ... Figure 2. Model adequacy results for the two empirical data sets, West African Ebola, and 2009 H1N1 influenza. The histograms show the distribution of two test statistics, the tree height and the slope ratio of the LTT plot, for the posterior predictive simulations. The black points also show the distribution of the test statistics, and they have been jittered along the $y$-axis to improve visualization. The red lines denote the value for the tree estimated from the empirical data. The posterior predictive $P$-value,$ P_{B}$, is shown for each test statistic. A feature of the empirical phylogenetic tree described by a test statistic, such as the tree height, is considered adequately described by the model if the empirical value falls within the 95% quantile range of the posterior predictive distribution, such that the $P_{B} $>0.05. Two more test statistics were computed, the ratio of external to internal branch lengths and the Colless index, which are shown in Supplementary Fig. S1 available on Dryad. Note that for the H1N1 influenza analyses, the values are shown in a log$_{\mathrm{10}}$ scale. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) 2018. Published by Oxford University Press, on behalf of the Society of Systematic Biologists.This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Syst Biol, Volume 68, Issue 2, 25 June 2018, Pages 358–364, https://doi.org/10.1093/sysbio/syy048 The content of this slide may be subject to copyright: please see the slide notes for details.

Figure 1. Posterior predictive simulation framework implemented in the TreeModelAdequacy package. Step (1) consists in ... Figure 1. Posterior predictive simulation framework implemented in the TreeModelAdequacy package. Step (1) consists in Bayesian analysis in BEAST under model M to estimate the posterior distribution of parameters $\eta $, shown with the arrow and posterior density in orange. In step (2), samples from the posterior are drawn to simulate phylogenetic trees, known as posterior predictive simulations, using MASTER as shown by the green arrow. In step (3), the posterior predictive simulations are analyzed in TreeStat to generate the posterior predictive distribution of test statistic $T_{a}$, shown by the blue arrow and probability density. Finally, $T_{a}~$is also computed for the tree from the empirical data using TreeStat, shown by the red arrow, to calculate a posterior predictive probability ($P_{B})$. Test statistics and $P_{B}$ values can also be computed for trees generated in other programs using TreeModelAdequacyAnalyser, given that the tree from the empirical data and the posterior predictive simulations are provided. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) 2018. Published by Oxford University Press, on behalf of the Society of Systematic Biologists.This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Syst Biol, Volume 68, Issue 2, 25 June 2018, Pages 358–364, https://doi.org/10.1093/sysbio/syy048 The content of this slide may be subject to copyright: please see the slide notes for details.