Bipartite co-occurrence networks were generated in CoNet and visualized in Cytoscape to display significant strong positive and negative co-occurring relationships.

Slides:

Advertisements

Similar presentations

ΜΕΤΑΣΥΛΛΕΚΤΙΚΗ ΦΥΣΙΟΛΟΓΙΑ ΕΡΓΑΣΤΗΡΙΟ 3. Μετασυλλεκτική Εργ3-Λιοσάτου Γ.2 ΒΙΟΛΟΓΙΚΟΙ ΠΑΡΑΓΟΝΤΕΣ ΠΟΥ ΕΠΗΡΕΑΖΟΥΝ ΤΗ ΦΘΟΡΑ ΤΩΝ ΟΠΩΡΟΚΗΠΕΥΤΙΚΩΝ Αναπνοή Η λειτουργία.

Advertisements

Complex 1 Complex 2 Complex 3

Heat maps summarizing Spearman correlations between log10-transformed cytokine levels (log IL-6, CCL-2, TNF, and VEGF-A [in picograms/milliliter]) in blood.

Long-chain fatty acids are less abundant in the cecal contents of coconut oil-fed mice than in the cecal contents of beef tallow-fed mice. Long-chain fatty.

اثرات گرمايش جهاني تغييرات آب و هوا، تأثيرات عميق و شديدي بر بسياري از عوامل اساسي موثر بر سلامت از جمله : آب، غذا، هوا و محيط زيست دارد كه اين مورد خود.

(A to G) TEM on negatively stained whole spores of C

Co-occurrence network between taxa and biomarkers.

Cell sorting scheme and its impact on bacterial diversity of the samples. Cell sorting scheme and its impact on bacterial diversity of the samples. (A)

Antimicrobial zone of inhibition.

Fold change differences for each bacterial genus in the two fraction pairs. Fold change differences for each bacterial genus in the two fraction pairs.

Ions representative of bronchial tissue (m/z 88

(A) Mean concentration of HMOs (in milligrams per milliliter, ± SD) in milk among mothers in the study. (A) Mean concentration of HMOs (in milligrams per.

Family level bar plots generated in QIIME 1. 9

Predicted microbiota age against the actual age of visitors and villagers. Predicted microbiota age against the actual age of visitors and villagers. (A)

Expression response of AT-rich genes to lanthanides.

SEM images of S. aureus ATCC cells left untreated (A) or treated with polymyxin B (PMB; 99.5 mg/liter) (B), FADDI-019 (1× MIC) (C), FADDI-019 (4×

Bacteria significantly correlated with DE miRNAs.

Individual genes exhibit distinct stage-specific expression among female gametocytes. Individual genes exhibit distinct stage-specific expression among.

Growth of L. monocytogenes strains AL4E, AT3E, and 10403S, derivative cured strain AT3Epc, and conjugation strains 10403SpclpL and 10403SpPL2 displayed.

Manders colocalization coefficient (MCC) values quantify the different levels of colocalization between TRP75 and interacting host proteins in E. chaffeensis-infected.

(A and B) Relative (A) and mean (B) abundances of reference viral genomes across the continuum summarized by host type. (A and B) Relative (A) and mean.

FLC treatment results in an increase in ploidy in a significant fraction of cells. FLC treatment results in an increase in ploidy in a significant fraction.

Phylogeny of the novel rhabdoviruses identified by UHTS

The distribution of Sias in tissues from 10-day postfertilization embryonated chicken eggs. The distribution of Sias in tissues from 10-day postfertilization.

C.2.10 Sample Questions.

Microbial community structure analysis.

Relative ITS2 abundance of Saccharomyces in stool over time as a Saccharomyces cerevisiae-free diet was consumed. Relative ITS2 abundance of Saccharomyces.

Gene expression separates male and female single gametocytes into distinct populations. Gene expression separates male and female single gametocytes into.

Relative growth of WT R2866 and the R2866ΔampG gene deletion mutant with Triton X-100. Relative growth of WT R2866 and the R2866ΔampG gene deletion mutant.

Spearman correlation of normalized relative abundances between MAGs from TBE6 and taxa in the epilimnion of the environment of origin (Trout Bog Lake).

Log2-fold change in relative abundance of differentially abundant OTUs in PyOM300 and PyOM700 (a and b) and in Ps soil and Ar soil (c and d). Log2-fold.

Activity of TP-271 administered i. v. and p. o

Co-occurrence network in tongue microbiota of 506 elderly adults built from SparCC correlation coefficients between sequence abundances. Co-occurrence.

Numbers of L. plantarum AJ11 and L

(A) Taxonomic identity at the phylum level of raw leachate (RL) and enrichment microcosms (E) as determined via Ion Torrent 16S rRNA gene amplicon sequencing.

Relative abundances of microeukaryotic taxa detected by ITS2 analysis of DNA or cDNA from stool. Relative abundances of microeukaryotic taxa detected by.

Shifts in the microbial community compositions of the control and antibiotic groups. Shifts in the microbial community compositions of the control and.

Putative assignment of (M + H)+ and (M − H)− peaks in biofilms grown on ITO-coated glass for the quinolones HHQ (C16H22NO), PQS (C16H21NO2), and NHQ (C18H25NO)

Comparison of taxonomic differences between stool microbiota from healthy patients and stool microbiota from ICU patients and stool from healthy patients.

TEM observation of the bacterial damage caused by egg white.

De novo generation of cervid prions.

E. coli CFT073 and E. coli MG1655 persistence.

Gallium isotopes at m/z and 70

Comparison of levels of microbiome diversity by BMI, stratified by geography. Comparison of levels of microbiome diversity by BMI, stratified by geography.

Impact of medical data on bacterial diversity of fractionated samples.

Prime and boosts with PBK001 vaccine provided 100% protection with low bacterial burden in organs. Prime and boosts with PBK001 vaccine provided 100% protection.

SAM transport by Gap4 in S. cerevisiae cells.

A. baumannii activates the autophagosome-lysosome system.

Spearman’s correlation analysis of microbiota and NMR spectra of the control and ciprofloxacin groups (A, C) or the vancomycin-imipenem group (B, D) after.

Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.

Functional microbiome differences between high-fat and standard chow diets. Functional microbiome differences between high-fat and standard chow diets.

Dominant bacterial phyla found in different stages.

Sequence comparisons of fungal HOG1 orthologues.

OMV-enriched proteins show a conserved N-terminal LES motif.

Comparison of community fungal and bacterial/archaeal diversity levels

Procrustes analysis comparing the spatial fit of unweighted UniFrac principal-coordinate matrices of bacterial communities (yellow spheres) and Bray-Curtis.

Interkingdom interactions between fungi and bacteria.

Comparison between early-life and year 2 AMR levels.

LEfSe comparison analysis between the control and ciprofloxacin or vancomycin-imipenem groups at the end of antibiotic treatment (A or B, respectively)

Beta-diversity analyses of microbial taxa recovered from ATM keypads.

Normalized abundance of tetracycline resistance genes in Swedish infants by AMR++. Normalized abundance of tetracycline resistance genes in Swedish infants.

Shannon rarefaction analysis.

Distribution of selected traits across the >4,000 strains in the most recent version of the database, including cell shape (A), spore formation (B), motility.

Relative proportions of taxa and UPGMA hierarchical clustering of the mock communities. Relative proportions of taxa and UPGMA hierarchical clustering.

Paradigm for the cycle of precision vaccinology.

Relative abundance of taxa in the 16S rRNA PCR amplicon and gDNA mock communities. Relative abundance of taxa in the 16S rRNA PCR amplicon and gDNA mock.

In silico coverage across fungal phyla.

Total ARG reads normalized by read length and 16S gene read count in early life in Bangladesh. Total ARG reads normalized by read length and 16S gene read.

Relative abundances of bacterial/archaeal groups in 16S rRNA data set.

Presentation transcript:

Bipartite co-occurrence networks were generated in CoNet and visualized in Cytoscape to display significant strong positive and negative co-occurring relationships between fungal and bacterial taxa in untreated CDI samples (A) and untreated non-CDI samples (B). Bipartite co-occurrence networks were generated in CoNet and visualized in Cytoscape to display significant strong positive and negative co-occurring relationships between fungal and bacterial taxa in untreated CDI samples (A) and untreated non-CDI samples (B). Regina Lamendella et al. mSphere 2018; doi:10.1128/mSphere.00572-17