EZH2-driven lung cancer as a molecularly distinct entity.

Slides:



Advertisements
Similar presentations
Volume 16, Issue 5, Pages (August 2016)
Advertisements

Lu Chen, PhD, Brienne E. Engel, PhD, Eric A. Welsh, PhD, Sean J
Regional lymph nodes and distal extracranial metastases are not a reliable surrogate for actionable mutation in brain metastases. Regional lymph nodes.
Volume 18, Issue 12, Pages (March 2017)
Volume 11, Issue 2, Pages (August 2012)
Volume 58, Issue 2, Pages (April 2015)
Somatic promoters correlate with immunoediting signatures.
Volume 23, Issue 7, Pages (May 2018)
OTX2 is associated with higher levels of activity when paired with NEUROD1 and arranged in clusters. OTX2 is associated with higher levels of activity.
A Comprehensive cis-eQTL Analysis Revealed Target Genes in Breast Cancer Susceptibility Loci Identified in Genome-wide Association Studies  Xingyi Guo,
by Varun Narendra, Pedro P. Rocha, Disi An, Ramya Raviram, Jane A
Volume 67, Issue 6, Pages e6 (September 2017)
Cyclin E1 Is Amplified and Overexpressed in Osteosarcoma
Reversing the TERT promoter mutation to WT reverses the active chromatin marks and alters long-range chromatin interactions. Reversing the TERT promoter.
Volume 17, Issue 9, Pages (November 2016)
Volume 62, Issue 1, Pages (April 2016)
Volume 67, Issue 3, Pages e7 (August 2017)
Volume 17, Issue 6, Pages (November 2016)
Generating ChIP-seq profiles from 18G core needle biopsies from radical prostatectomy samples. Generating ChIP-seq profiles from 18G core needle biopsies.
Genome-wide promoter methylation of hairy cell leukemia
Validation of ChIP-seq reads.
Gene expression changes upon modulation of DNMT3A transcripts.
Volume 14, Issue 6, Pages (June 2014)
Volume 22, Issue 3, Pages (January 2018)
Volume 13, Issue 1, Pages (October 2015)
Volume 122, Issue 6, Pages (September 2005)
Volume 66, Issue 4, Pages e4 (May 2017)
Down-regulation of LATS1 promotes the formation of tumors enriched in basal-like features. Down-regulation of LATS1 promotes the formation of tumors enriched.
Volume 14, Issue 6, Pages (June 2014)
Volume 64, Issue 5, Pages (December 2016)
Volume 23, Issue 4, Pages (April 2018)
Differential binding of H3K36me3 in G34-mutant KNS42 cells drives pediatric GBM expression signatures. Differential binding of H3K36me3 in G34-mutant KNS42.
Volume 1, Issue 1, Pages (July 2015)
Volume 15, Issue 12, Pages (June 2016)
Volume 24, Issue 1, Pages 1-10 (January 2014)
Increased signal intensity and significant enrichment of transcription factor motifs is observed with DSG in breast tissue. Increased signal intensity.
Increased signal intensity and significant enrichment of transcription factor motifs is observed with DSG in primary prostate tissue. Increased signal.
ChIP-seq analyses in primary in prostate tissue.
The CREBBP-modulated network is enriched in signaling pathways upregulated in the light zone (LZ). The CREBBP-modulated network is enriched in signaling.
Volume 58, Issue 2, Pages (April 2015)
Distinct molecular and clinical correlates of H3F3A mutation subgroups
Derivation of ImSig. Derivation of ImSig. A, An example of a correlation network generated from a tissue data set where nodes represent unique genes and.
EZH2 overexpression establishes a unique and conserved super-enhancer–associated transcriptional landscape. EZH2 overexpression establishes a unique and.
Integrated mRNA and microRNA expression and DNA methylation clusters.
Transcriptional and genomic targets of EN1 in TNBC cells.
EN1-associated chromatin complexes in breast cancer cells.
Volume 12, Issue 12, Pages (September 2015)
SY-1425 shows similar response in RARA-high AML cell lines to APL
CREBBP loss-of-function results in gene expression repression signature. CREBBP loss-of-function results in gene expression repression signature. A–D,
Bortezomib induces an NRF2 signature and NRF2 protein in tumor cells from leukemic MCL. Gene sets regulated by bortezomib (Supplementary Tables S3 and.
Gene expression profiles of T cells.
Loss of HDAC3 inhibits CREBBP-mutant lymphoma growth in vitro and in vivo. Loss of HDAC3 inhibits CREBBP-mutant lymphoma growth in vitro and in vivo. A,
Frequently mutated genes in colorectal cancer.
Molecular definitions of lung adenocarcinoma subtypes.
BRD4 expression and genomic distribution in B-CLL.
KRAS-mutant lung adenocarcinoma subsets exhibit distinct patterns of immune system engagement. KRAS-mutant lung adenocarcinoma subsets exhibit distinct.
A, heatmap of copy number alterations determined by array CGH for a panel of 79 frozen NSCLC samples. A, heatmap of copy number alterations determined.
Distinct subtypes of CAFs are detected in human PDAC
Gene expression heatmap of non–T-cell-inflamed, intermediate, and T-cell–inflamed testicular germ cell tumors from TCGA. Genes are on the row, and samples.
Superenhancers near the KLF5 gene are focally amplified in diverse cancer types. Superenhancers near the KLF5 gene are focally amplified in diverse cancer.
Transcriptomic Analysis of GmSIN1 OE-1 Transgenic Soybean.
The ovarian cancer cell lines modestly recapitulate the spectrum of mutations found in primary ovarian tumors. The ovarian cancer cell lines modestly recapitulate.
Driver pathways and key genes in OSCC
Integrated analysis of gene expression and copy number alterations.
Mutant TERT promoter displays active histone marks and distinct long-range interactions: A, cell lines that were used in the study with their origin and.
BIM expression predicts the response of patients with EGFR-mutant lung cancers. BIM expression predicts the response of patients with EGFR-mutant lung.
Transcriptional and epigenetic landscapes of RMS cell lines and primary tumors. Transcriptional and epigenetic landscapes of RMS cell lines and primary.
Transcriptome profiling of PD-L1 antibody–treated macrophages showed inflammatory phenotype, increased survival and proliferation, and decreased apoptosis.
Genome-wide DNA hypomethylation associated with DNMT3A mutation in murine and human FLT3ITD AML. Human: A–C, volcano plot (A) representation of mean methylation.
Molecular Therapy - Nucleic Acids
Presentation transcript:

EZH2-driven lung cancer as a molecularly distinct entity. EZH2-driven lung cancer as a molecularly distinct entity. A, heatmap of log2 fold-change (LFC) gene expression in murine EZH2-overexpressing (OE) normal lungs (green), KRAS-mutant lung tumors (black), EGFR-mutant lung tumors (blue), and EZH2-OE lung tumors (red). All genes were selected across all samples for clustering. B, box plot of ssGSEA comparing the enrichment of MEK (left) and mTOR (right) gene sets in human TCGA lung adenocarcinomas with specific driver mutations (KRAS, EGFR, unknown) or high EZH2 levels. C, waterfall plot showing rank-ordered change in H3K27ac signal at SE-containing regions between mouse WT lung and EZH2_OE (left), and KRAS and EZH2_OE (right). The x-axis depicts the LFC in H3K27ac signal. SEs are ranked by LFC in signal with regions gaining the most H3K27ac in tumor at the top. D, core transcriptional regulatory circuitry in murine WT and tumor lung tissues (EZH2- or KRAS-driven) as defined by ChIP-seq for H3K27ac. Nodes are transcription factors (TF) that are associated with an SE. Edges indicate a regulatory interaction between two TFs as defined by an enrichment of TF binding motifs in the respective SE. Haikuo Zhang et al. Cancer Discov 2016;6:1006-1021 ©2016 by American Association for Cancer Research