Analysis of Fusobacterium nucleatum ATCC 23726 genomes compared to previous builds. Analysis of Fusobacterium nucleatum ATCC 23726 genomes compared to.

Slides:



Advertisements
Similar presentations
Genome Sequencing in the Legumes Le et al Phylogeny Major sequencing efforts Minor sequencing efforts ~14 MY ~45 MY.
Advertisements

454 Genome Sequence Assembly and Analysis HC70AL S Brandon Le & Min Chen.
Two parts of the proteomic tree with EVGs of putative Flavobacteriaceae phages. Two parts of the proteomic tree with EVGs of putative Flavobacteriaceae.
(A to G) TEM on negatively stained whole spores of C
Putative ammonia transporters are not required for ammonia release during N-acetylglucosamine pH neutralization. Putative ammonia transporters are not.
Antimicrobial zone of inhibition.
TEM on spore section of strain ATCC 9714.
Ions representative of bronchial tissue (m/z 88
Size profile of viral small RNAs obtained from control cells and RIG-I- and MDA5-deficient (KO) cells after infection for 24 h with SINV at an MOI of 0.1,
(A) Mean concentration of HMOs (in milligrams per milliliter, ± SD) in milk among mothers in the study. (A) Mean concentration of HMOs (in milligrams per.
Genomes with Fe-S cluster assembly-related genes.
Phylogeny of Shiga toxin-encoding phage from SDi/SJo S. sonnei isolates. Phylogeny of Shiga toxin-encoding phage from SDi/SJo S. sonnei isolates. (A) progressiveMauve.
Isolation and phylogenetic characterization of ISS strains.
Comparison of the variable regions of (A) pHNZY32, pHNZY118, and pHNAH24; (B) pHNMCC14; (C) pHNFKU92; (D) pE80; (E) pECB11; (F) p42-2; and (G) pSLK172-2.
Predicted microbiota age against the actual age of visitors and villagers. Predicted microbiota age against the actual age of visitors and villagers. (A)
Expression response of AT-rich genes to lanthanides.
SEM images of S. aureus ATCC cells left untreated (A) or treated with polymyxin B (PMB; 99.5 mg/liter) (B), FADDI-019 (1× MIC) (C), FADDI-019 (4×
Spores of strain ATCC 9714 imaged by SEM (A), cryo-EM (B), and 3D-SIM (C and D) with spores labeled with lipid dyes DiO and FM 4-64FX (C) or DiO and spore-specific.
Polymorphism discovery in 09-CB1 × IPO323 versus 09-ASA-3apz × IPO94269 bulks. Polymorphism discovery in 09-CB1 × IPO323 versus 09-ASA-3apz × IPO94269.
Assembly of the novel bat gammaherpesvirus genome highlights ORFs related to EHV-2 and accessory ORFs related to other gammaherpesviruses. Assembly of.
Manders colocalization coefficient (MCC) values quantify the different levels of colocalization between TRP75 and interacting host proteins in E. chaffeensis-infected.
FLC treatment results in an increase in ploidy in a significant fraction of cells. FLC treatment results in an increase in ploidy in a significant fraction.
Phylogeny of the novel rhabdoviruses identified by UHTS
Quiescence of the E. coli CFT073 original clinical isolate on glucose plates. Quiescence of the E. coli CFT073 original clinical isolate on glucose plates.
The distribution of Sias in tissues from 10-day postfertilization embryonated chicken eggs. The distribution of Sias in tissues from 10-day postfertilization.
Protein sequence alignments for the BcfD (A) and StfH (B) allelic groups from S. Newport. Protein sequence alignments for the BcfD (A) and StfH (B) allelic.
Transcriptomic analysis of Jamaican fruit bats infected with Tacaribe virus (TCRV). Transcriptomic analysis of Jamaican fruit bats infected with Tacaribe.
KEGG pathway analysis of the C
MetaPhase clustering results on the M-Y draft metagenome assembly.
Relative growth of WT R2866 and the R2866ΔampG gene deletion mutant with Triton X-100. Relative growth of WT R2866 and the R2866ΔampG gene deletion mutant.
Southern blot analysis of ΔpksP mutant generated in the Af293 background. Southern blot analysis of ΔpksP mutant generated in the Af293 background. (A)
C. difficile colonization alters gene transcription of taxonomic groups differentially between antibiotic pretreatments. C. difficile colonization alters.
Dynamic ranges of anti-PnPS IgG Reference standard serum 007sp for each of 13 serotypes. Dynamic ranges of anti-PnPS IgG Reference standard serum 007sp.
Nonmetric multidimensional scaling (NMDS) (A) and dendrogram and heat map (B) of the relative abundances of the data in the custom database across the.
Growth of Salmonella and E. coli in egg white.
Characterization of chuvirus-like viruses.
E. coli CFT073 and E. coli MG1655 persistence.
The Amazon viral scaffolds and viral genomes most important for river and plume segregation. The Amazon viral scaffolds and viral genomes most important.
Proteomic tree. Proteomic tree. The dendrogram represents proteome-wide similarity relationships among 4,240 prokaryotic dsDNA virus genomes. Branches.
Phenotypic and genotypic features of bacteriophage Andhra.
Gallium isotopes at m/z and 70
Phylogenetic analysis of K. quasipneumoniae subsp
SAM transport by Gap4 in S. cerevisiae cells.
A. baumannii activates the autophagosome-lysosome system.
Distribution of signaling molecules in a section of P
Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.
Functional microbiome differences between high-fat and standard chow diets. Functional microbiome differences between high-fat and standard chow diets.
ITS rRNA gene locus. ITS rRNA gene locus. Schematic of the eukaryotic ribosomal gene cluster. The SILVA database contains sequences of the 18S gene, while.
Neonatal HSV-2 genomes are genetically distinct from one another and encompass a broad range of known HSV-2 genetic diversity. Neonatal HSV-2 genomes are.
Heterotrophic and autotrophic particle (cell) abundance in water column. Heterotrophic and autotrophic particle (cell) abundance in water column. Small.
KEGG cluster of DEGs of S
A. baumannii stimulates the autophagy.
OMV-enriched proteins show a conserved N-terminal LES motif.
Comparison between early-life and year 2 AMR levels.
Mammalian cell cytotoxicity shown by macrophage response to DM262.
Normalized abundance of tetracycline resistance genes in Swedish infants by AMR++. Normalized abundance of tetracycline resistance genes in Swedish infants.
Shannon rarefaction analysis.
Bipartite co-occurrence networks were generated in CoNet and visualized in Cytoscape to display significant strong positive and negative co-occurring relationships.
Detection (colored) or nondetection (white) of ARGs corresponding to specific ARG mechanisms. Detection (colored) or nondetection (white) of ARGs corresponding.
PHs of olive brines. pHs of olive brines. The average ± standard deviation (SD) of two independent replicates at each time point is shown. Acetic acid.
Distribution of selected traits across the >4,000 strains in the most recent version of the database, including cell shape (A), spore formation (B), motility.
Paradigm for the cycle of precision vaccinology.
In silico taxon coverage.
In silico coverage across fungal phyla.
Venn diagram of the distribution of protein CDSs inferred from the genomes of A. hydrophila ATCC 7966T, E1, and E2. Venn diagram of the distribution of.
Phylogenetic analysis of complete Fusobacterium genomes.
Total ARG reads normalized by read length and 16S gene read count in early life in Bangladesh. Total ARG reads normalized by read length and 16S gene read.
Normalized weight gain of protein-sufficient and -deficient HRV-infected pigs transplanted with sufficient and deficient HIFM (sHIFM/dHIFM) and monitored.
Batch variation of formulations from two products by two different genomic-scale techniques. Batch variation of formulations from two products by two different.
Confirmation of spliced RNA in cells transfected with a wild-type or Pol(−) MR766 ZIKV plasmid. Confirmation of spliced RNA in cells transfected with a.
Presentation transcript:

Analysis of Fusobacterium nucleatum ATCC 23726 genomes compared to previous builds. Analysis of Fusobacterium nucleatum ATCC 23726 genomes compared to previous builds. (A) Alignment of the complete F. nucleatum subsp. nucleatum ATCC 23726 genome with the 67-contig draft assembly (GenBank accession number ADVK01000000). (B) Confirmation of a 452-kb genomic inversion in the previous F. nucleatum subsp. nucleatum ATCC 25586 genome assembly (GenBank accession number GCA_000007325.1). S. Michelle Todd et al. mSphere 2018; doi:10.1128/mSphere.00269-18