Median unweighted UniFrac distances between three dolphin habitats: Shedd, MMP, and Sarasota. Median unweighted UniFrac distances between three dolphin.

Slides:

Advertisements

Similar presentations

An Overview of Clustering Methods Michael D. Kane, Ph.D.

Advertisements

Cluster analysis of 50 genes identified as affecting variability and or pheromone response output Cluster analysis of 50 genes identified as affecting.

Diversity of plants in a diet.

Host transcriptional profiling distinguishes patients with acute LRTI (LRTI+C+M) from those with noninfectious acute respiratory illness (no-LRTI). Host.

Cooccurrence network for dolphin rectum microbiome.

Benchmarks of OTU picking tools on natural communities.

Dysbiosis of gut microbiota patterns in Chinese patients with IBD

(A) Hierarchical clustering was performed to identify groups of patients with similar RNASeq expression of 20 genes associated with reduced survivability.

Blooms and effect sizes.

Volume 141, Issue 1, Pages (July 2011)

Gut microbial diversity of mice in voluntary and forced exercise groups. Gut microbial diversity of mice in voluntary and forced exercise groups. Weighted.

(a) Bifurcating tree generated from hierarchical clustering of OTUs based on mean pH. (a) Bifurcating tree generated from hierarchical clustering of OTUs.

Optimized KatharoSeq protocol applied to a JPL cleanroom facility.

Fluoride affects stool-derived taxa found in the oral cavity.

Hierarchical cluster analysis of reproducible parent masses (MS) representative of produced SMs from oral in vitro-grown biofilm representing >100 bacterial.

Temporal and spatial patterns.

Concordance across the transcriptome and proteome data subsets.

(a) Correspondence analysis of 88 soil samples.

Performance of FDR methods on filtered microbiome data.

Bettina Heidecker et al. BTS 2016;1:

OTU and beta-diversity novelty.

Statistical comparison of metabolites and analysis of differential metabolites and key metabolic pathways. Statistical comparison of metabolites and analysis.

Unweighted UniFrac PCoA plots.

miRNA target pathways correlated with CRC-associated bacteria.

Comparison of distal gut metabolite profiles between Egyptian and U. S

Bacteria significantly correlated with DE miRNAs.

Bacterial community dissimilarity, as measured by weighted UniFrac, a quantitative measurement (a), and unweighted UniFrac, a qualitative measurement (b),

Enterotypes of the distal gut microbial profiles.

Distribution of microbial functions in urban waterways.

Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.

(a) Hierarchical clustering of closed-reference OTUs based on mean pH; (b) balance of low-pH-associated organisms (3.8 < mean pH < 6.7) and high-pH-associated.

Four major patterns identified through hierarchical clustering plotted by IPD ratio over time. Four major patterns identified through hierarchical clustering.

Transcriptome analyses of four regions of the mouse brain.

Clustering The process of grouping samples so that the samples are similar within each group.

The Inuit microbiome has a community composition similar to that of the Western microbiome. The Inuit microbiome has a community composition similar to.

(a, b) Hypothetical scenario where 2 samples of 2 proportions may explain two different scenarios in the environment. (a, b) Hypothetical scenario where.

16S rRNA gene survey reveals a moderate impact of formula-based B

Core type 1 interferon (IFN-1)-associated genes are more highly expressed in myeloid subsets. Core type 1 interferon (IFN-1)-associated genes are more.

Hierarchical clustering analysis of 7785 genes (genes with a log-ratio variation in the 25th centile and >5% missing data were excluded) (A) A heat map.

Exploration of gut and skin microbiome of the habitat switching experiment with Calour. Exploration of gut and skin microbiome of the habitat switching.

Single-cell phenotyping with Traitar.

(A) Box-and-whisker plots illustrate the median, maximum, minimum, and first and third quartiles of the distribution of the number of observed OTUs and.

Belowground microbiome community responses.

Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.

A principal-coordinate analysis plot of UniFrac distances from de novo OTUs as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.

Microbial communities of the differently treated mice with lupus cluster separately after treatment. Microbial communities of the differently treated mice.

Benchmarks of OTU picking tools on artificial communities.

(A and B) Unweighted (A) and weighted (B) UniFrac clustering of three 16S rRNA hypervariable regions using fragment insertion SATé-enabled phylogenetic.

Source-based CP BCI robotic arm control.

A principal-coordinate analysis plot of UniFrac distances from Deblur as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.

Daily percentages of probiotic oligotype reads found in the dolphin rectum samples. Daily percentages of probiotic oligotype reads found in the dolphin.

Superspacers shared between viral strains.

Pairwise UniFrac distances for each consecutive-time pair from the same sample, aggregated and smoothed to distribution functions before and while taking.

A principal-coordinate analysis plot of UniFrac distances from UNOISE2 as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.

Phylogenetic diversity (PD) by signiﬁcant market integration factors, house modernity (A), power usage (B), and house modernity and power usage (C). Phylogenetic.

Comparison of the original 515f/806r primer pair and the new, modified 515f/806rB primer pair. Comparison of the original 515f/806r primer pair and the.

Enrichment of KEGG pathways in microbial genes in different samples.

Comparison of gut microbiota alpha diversity in different preservatives based on 16S rRNA gene V3-V4 amplicon sequencing. Comparison of gut microbiota.

Differential alterations of metabolites associated with synthesis of lipopolysaccharide (A) and peptidoglycan (B) in strains PAK and PAKpmrB6 in response.

Similarities between the studies: Differences between the studies:

PCoA plots of subgingival samples with disease classification overlaid

Fig. 4 Identification of C

A, unsupervised hierarchical clustering of the expression of probe sets differentially expressed in the oral mucosa of smokers versus never smokers. A,

Double-hierarchical clustering analysis.

Beta-diversity analyses of microbial taxa recovered from ATM keypads.

Hierarchically clustered heat map showing correlations between the relative abundances of microbial species and the levels of volatile compounds in kefir.

Dynamic Bayesian inference network.

Higher sub-OTU resolution, in combination with SEPP phylogenies, exposed relevant ecological signals. Higher sub-OTU resolution, in combination with SEPP.

Infant skin and oral mycobiomes by birth mode.

Small RNA sequencing data quality.

Presentation transcript:

Median unweighted UniFrac distances between three dolphin habitats: Shedd, MMP, and Sarasota. Median unweighted UniFrac distances between three dolphin habitats: Shedd, MMP, and Sarasota. The rows and columns have been grouped with hierarchical clustering to present more similar patterns next to each other. Darker blue squares represent higher similarities between samples. Gray squares represent comparisons with less than the minimum 100 UniFrac distances to confidently compute the statistics. Cesar Cardona et al. mSystems 2018; doi:10.1128/mSystems.00052-18