Volume 83, Issue 4, Pages (October 2002)

Slides:

Advertisements

Similar presentations

Tethered Polymer-Supported Planar Lipid Bilayers for Reconstitution of Integral Membrane Proteins: Silane-Polyethyleneglycol-Lipid as a Cushion and Covalent.

Advertisements

How Do Thermophilic Proteins and Proteomes Withstand High Temperature? Lucas Sawle, Kingshuk Ghosh Biophysical Journal Volume 101, Issue 1, Pages

Binding of Cations of Group IA and IIA to Bovine Serum Amine Oxidase: Effect on the Activity Maria Luisa Di Paolo, Marina Scarpa, Alessandra Corazza, Roberto.

Light-Scattering Studies of Protein Solutions: Role of Hydration in Weak Protein-Protein Interactions A. Paliwal, D. Asthagiri, D. Abras, A.M. Lenhoff,

Inhibitor Binding Increases the Mechanical Stability of Staphylococcal Nuclease Chien-Chung Wang, Tian-Yow Tsong, Yau-Heiu Hsu, Piotr E. Marszalek Biophysical.

Determination of the Interfacial Water Content in Protein-Protein Complexes from Free Energy Simulations Peter Monecke, Thorsten Borosch, Jürgen Brickmann,

The Dynamics and Mechanics of Endothelial Cell Spreading Cynthia A. Reinhart-King, Micah Dembo, Daniel A. Hammer Biophysical Journal Volume 89, Issue 1,

Tryptophan-Lipid Interactions in Membrane Protein Folding Probed by Ultraviolet Resonance Raman and Fluorescence Spectroscopy Katheryn M. Sanchez, Guipeun.

Functional Analysis of the Neurofibromatosis Type 2 Protein by Means of Disease- Causing Point Mutations Renee P. Stokowski, David R. Cox The American.

A Multiscale Red Blood Cell Model with Accurate Mechanics, Rheology, and Dynamics Dmitry A. Fedosov, Bruce Caswell, George Em Karniadakis Biophysical Journal.

Thermal Fluctuations of Red Blood Cell Membrane via a Constant-Area Particle- Dynamics Model Gianluca Marcelli, Kim H. Parker, C. Peter Winlove Biophysical.

Structure of the Alamethicin Pore Reconstructed by X-Ray Diffraction Analysis Shuo Qian, Wangchen Wang, Lin Yang, Huey W. Huang Biophysical Journal Volume.

X-Ray Absorption Spectroscopy of Dinuclear Metallohydrolases David L. Tierney, Gerhard Schenk Biophysical Journal Volume 107, Issue 6, Pages

Location, Structure, and Dynamics of the Synthetic Cannabinoid Ligand CP-55,940 in Lipid Bilayers Tomohiro Kimura, Kejun Cheng, Kenner C. Rice, Klaus Gawrisch.

The Nuclear Pore Complex Mystery and Anomalous Diffusion in Reversible Gels Thomas Bickel, Robijn Bruinsma Biophysical Journal Volume 83, Issue 6, Pages.

Cytoskeletal Polymer Networks: Viscoelastic Properties are Determined by the Microscopic Interaction Potential of Cross-links O. Lieleg, K.M. Schmoller,

Contrast Inversion in the Epifluorescence of Cholesterol-Phospholipid Monolayers T.M. Okonogi, H.M. McConnell Biophysical Journal Volume 86, Issue 2, Pages.

A Hydrodynamic Model for Hindered Diffusion of Proteins and Micelles in Hydrogels Ronald J. Phillips Biophysical Journal Volume 79, Issue 6, Pages

Dissecting Streptavidin-Biotin Interaction with a Laminar Flow Chamber Anne Pierres, Dominique Touchard, Anne-Marie Benoliel, Pierre Bongrand Biophysical.

Lever-Arm Mechanics of Processive Myosins Yujie Sun, Yale E. Goldman Biophysical Journal Volume 101, Issue 1, Pages 1-11 (July 2011) DOI: /j.bpj

Spatiotemporal Image Correlation Spectroscopy (STICS) Theory, Verification, and Application to Protein Velocity Mapping in Living CHO Cells Benedict Hebert,

Mesoscale Simulation of Blood Flow in Small Vessels Prosenjit Bagchi Biophysical Journal Volume 92, Issue 6, Pages (March 2007) DOI: /biophysj

The Importance of the Hook Region of the Cochlea for Bone-Conduction Hearing Namkeun Kim, Charles R. Steele, Sunil Puria Biophysical Journal Volume 107,

Nonresonant Confocal Raman Imaging of DNA and Protein Distribution in Apoptotic Cells N. Uzunbajakava, A. Lenferink, Y. Kraan, E. Volokhina, G. Vrensen,

The Interrelations among Stochastic Pacing, Stability, and Memory in the Heart Hila Dvir, Sharon Zlochiver Biophysical Journal Volume 107, Issue 4, Pages.

Cell Traction Forces Direct Fibronectin Matrix Assembly Christopher A. Lemmon, Christopher S. Chen, Lewis H. Romer Biophysical Journal Volume 96, Issue.

Design of Superior Spider Silk: From Nanostructure to Mechanical Properties Ning Du, Xiang Yang Liu, Janaky Narayanan, Lian Li, Matthew Lek Min Lim, Daiqin.

Mechanical Properties of Spider Dragline Silk: Humidity, Hysteresis, and Relaxation T. Vehoff, A. Glišović, H. Schollmeyer, A. Zippelius, T. Salditt Biophysical.

Agarose-Dextran Gels as Synthetic Analogs of Glomerular Basement Membrane: Water Permeability Jeffrey A. White, William M. Deen Biophysical Journal Volume.

Phospholipid-Cholesterol Bilayers under Osmotic Stress Emma Sparr, Linda Hallin, Natalia Markova, Håkan Wennerström Biophysical Journal Volume 83, Issue.

Nonlinear Poisson Equation for Heterogeneous Media Langhua Hu, Guo-Wei Wei Biophysical Journal Volume 103, Issue 4, Pages (August 2012) DOI: /j.bpj

Direct Measurements of the Mechanical Stability of Zinc-Thiolate Bonds in Rubredoxin by Single-Molecule Atomic Force Microscopy Peng Zheng, Hongbin Li.

Chia-Pin Pan, Mary D. Barkley Biophysical Journal

Maryam Sayadi, Seiichiro Tanizaki, Michael Feig Biophysical Journal

Philippe Derreumaux, Tamar Schlick Biophysical Journal

Use of Decoys to Optimize an All-Atom Force Field Including Hydration

A Dynamics Criterion to Determine Allostery

Propofol-related green urine

Yufeng Liu, Meng Ke, Haipeng Gong Biophysical Journal

Sandeep Kumar, Ruth Nussinov Biophysical Journal

Volume 83, Issue 4, Pages (October 2002)

Volume 84, Issue 6, Pages (June 2003)

Olivier Fisette, Stéphane Gagné, Patrick Lagüe Biophysical Journal

Eeva K. Leinala, Peter L. Davies, Zongchao Jia Structure

Volume 102, Issue 8, Pages (April 2012)

Investigating How Peptide Length and a Pathogenic Mutation Modify the Structural Ensemble of Amyloid Beta Monomer Yu-Shan Lin, Gregory R. Bowman, Kyle A.

Henry van den Bedem, Ellen Kuhl Biophysical Journal

Relation between the Conformational Heterogeneity and Reaction Cycle of Ras: Molecular Simulation of Ras Chigusa Kobayashi, Shinji Saito Biophysical.

Affinity and Specificity of Levamlodipine-Human Serum Albumin Interactions: Insights into Its Carrier Function Zuojia Liu, Xiliang Zheng, Xiurong Yang,

Emel Ficici, Daun Jeong, Ioan Andricioaei Biophysical Journal

Tianjun Sun, Peter L. Davies, Virginia K. Walker Biophysical Journal

Protein-Protein Docking: From Interaction to Interactome

Volume 86, Issue 6, Pages (June 2004)

Volume 74, Issue 5, Pages (May 1998)

Volume 112, Issue 9, Pages (May 2017)

Volume 74, Issue 8, Pages (October 2008)

Min Wang, Mary Prorok, Francis J. Castellino Biophysical Journal

Molecular Mechanism for Stabilizing a Short Helical Peptide Studied by Generalized- Ensemble Simulations with Explicit Solvent Yuji Sugita, Yuko Okamoto

Volume 90, Issue 6, Pages (March 2006)

Accurate Flexible Fitting of High-Resolution Protein Structures to Small-Angle X-Ray Scattering Data Using a Coarse-Grained Model with Implicit Hydration.

Mechanism of Anionic Conduction across ClC

Volume 98, Issue 1, Pages (January 2010)

J.P. Junker, K. Hell, M. Schlierf, W. Neupert, M. Rief

Huan-Xiang Zhou, Osman Bilsel Biophysical Journal

Volume 74, Issue 1, Pages (January 1998)

Volume 113, Issue 3, Pages (August 2017)

Tianjun Sun, Peter L. Davies, Virginia K. Walker Biophysical Journal

Volume 84, Issue 4, Pages (April 2003)

A Delocalized Proton-Binding Site within a Membrane Protein

Evolution of Specificity in Protein-Protein Interactions

Presentation transcript:

Volume 83, Issue 4, Pages 2202-2210 (October 2002) Analysis of Ice-Binding Sites in Fish Type II Antifreeze Protein by Quantum Mechanics Yuhua Cheng, Zuoyin Yang, Hongwei Tan, Ruozhuang Liu, Guangju Chen, Zongchao Jia Biophysical Journal Volume 83, Issue 4, Pages 2202-2210 (October 2002) DOI: 10.1016/S0006-3495(02)73980-5 Copyright © 2002 The Biophysical Society Terms and Conditions

Figure 1 The optimized patch 1 system in the AFP-{112¯1} ice series. Type II AFP is shown as a green ribbon. The O atoms and H atoms in the ice are shown in red and blue, respectively. Biophysical Journal 2002 83, 2202-2210DOI: (10.1016/S0006-3495(02)73980-5) Copyright © 2002 The Biophysical Society Terms and Conditions

Figure 2 Interaction energy curve. (A) The random ice series; (B) The regular ice series. It is evident that patch 1 consistently has the best interaction energy. In general, all three different methods generate a similar trend in terms of energy change. Biophysical Journal 2002 83, 2202-2210DOI: (10.1016/S0006-3495(02)73980-5) Copyright © 2002 The Biophysical Society Terms and Conditions