Fig. 3 Gene expression analysis in 48-plex drug treatment experiments.

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Fig. 3 Gene expression analysis in 48-plex drug treatment experiments. Gene expression analysis in 48-plex drug treatment experiments. (A) Hierarchical clustered heatmap of averaged gene expression profiles for 48-plex drug treatment experiments in K562 cells. Each column represents averaged data in a drug, and each row represents a gene. DEGs were used in this heatmap. The scale bar of relative expression is on the right side. The ability of the drugs to inhibit kinase proteins is shown as binary colors (dark gray indicating positive) at the top. The bar plot at the top shows the cell count for each. (B) Volcano plot displaying DEGs of imatinib mesylate compared with DMSO controls. Genes that have a P value smaller than 0.05 and an absolute value of log (fold change) larger than 0.25 are considered significant. Up-regulated genes are colored in green, down-regulated genes are colored in red, and insignificant genes are colored in gray. Ten genes with the lowest P value are labeled. (C) Venn diagram showing the relationship between DEGs of three drug groups. Fourteen drugs are classified into three groups according to their protein targets (see Fig. 2C, top), and differential expression analysis is performed by comparing each group with DMSO controls. Relations of both positively (left) and negatively (right) regulated genes in each group are shown. (D) Plot showing a correlation between fold changes of expression in cells treated with mTOR inhibitors and BCR-ABL inhibitors compared with DMSO controls. Dongju Shin et al. Sci Adv 2019;5:eaav2249 Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).