Relative abundances of bacterial/archaeal groups in 16S rRNA data set.

Slides:

Advertisements

Similar presentations

M. Malone, K. Johani, S. O. Jensen, I. B. Gosbell, H. G. Dickson, H

Advertisements

X AND R CHART EXAMPLE IN-CLASS EXERCISE

Taxonomic composition of subway microbial communities.

Exploration of the data set with age as a continuous variable.

Microbial community dissimilarity.

Composition of microbial communities in induced sputa of healthy and mild, moderate, severe or very severe (end-stage) lung disease affected individuals.

Relative abundances of the top 10 most abundant OTUs across all fish samples are shown along with the data from the probiotic B. pumilus RI06-95 (OTU 3673)

Effect of protocol modifications.

Inference of Environmental Factor-Microbe and Microbe-Microbe Associations from Metagenomic Data Using a Hierarchical Bayesian Statistical Model Yuqing.

Map and population demographic metadata of sample sites in New York City. Map and population demographic metadata of sample sites in New York City. Microbial.

Microbial diversity of the 10 body locations sampled.

(a) Bifurcating tree generated from hierarchical clustering of OTUs based on mean pH. (a) Bifurcating tree generated from hierarchical clustering of OTUs.

Titration of antibiotic perturbations results in altered community structures and C. difficile colonization resistance. Titration of antibiotic perturbations.

Putative MBTA microbial community sources.

Nonmetric multidimensional scaling (NMDS) plots of fecal and biopsy sample-based Bray-Curtis distances computed from the relative abundances of the 258.

Family level bar plots generated in QIIME 1. 9

Positions of LSUCC isolates relative to matching OTUs within the top 60 ranks for the most successful experiment, CJ2, which is enlarged to allow for OTU.

Heatmaps of differential OTUs

Example usage of mockrobiota MC resource for marker gene and metagenome sequencing pipelines. Example usage of mockrobiota MC resource for marker gene.

Differential relative abundance of major taxa for successive pairwise comparisons. Differential relative abundance of major taxa for successive pairwise.

Individual genes exhibit distinct stage-specific expression among female gametocytes. Individual genes exhibit distinct stage-specific expression among.

Individual genes exhibit distinct female-enriched expression patterns.

(A and B) Relative (A) and mean (B) abundances of reference viral genomes across the continuum summarized by host type. (A and B) Relative (A) and mean.

(a) Hierarchical clustering of closed-reference OTUs based on mean pH; (b) balance of low-pH-associated organisms (3.8 < mean pH < 6.7) and high-pH-associated.

RNA-FISH validation of male and female markers.

The Inuit microbiome has a community composition similar to that of the Western microbiome. The Inuit microbiome has a community composition similar to.

Canonical correspondence analysis (CCA) showing the correlations among soil edaphic factors and microbial communities from each sample type. Canonical.

Cecal metabolome during C. difficile colonization and infection.

Relative ITS2 abundance of Saccharomyces in stool over time as a Saccharomyces cerevisiae-free diet was consumed. Relative ITS2 abundance of Saccharomyces.

Aboveground and belowground samples showed differences in their bacterial community structures and compositions, while bulk soil and root communities differed.

Relative growth of WT R2866 and the R2866ΔampG gene deletion mutant with Triton X-100. Relative growth of WT R2866 and the R2866ΔampG gene deletion mutant.

Spearman correlation of normalized relative abundances between MAGs from TBE6 and taxa in the epilimnion of the environment of origin (Trout Bog Lake).

Log2-fold change in relative abundance of differentially abundant OTUs in PyOM300 and PyOM700 (a and b) and in Ps soil and Ar soil (c and d). Log2-fold.

Compositional PCA plot of samples (A) and OTU loadings (B) for the initial data set. Compositional PCA plot of samples (A) and OTU loadings (B) for the.

Co-occurrence network in tongue microbiota of 506 elderly adults built from SparCC correlation coefficients between sequence abundances. Co-occurrence.

(A) Box-and-whisker plots illustrate the median, maximum, minimum, and first and third quartiles of the distribution of the number of observed OTUs and.

(A) Taxonomic identity at the phylum level of raw leachate (RL) and enrichment microcosms (E) as determined via Ion Torrent 16S rRNA gene amplicon sequencing.

Differentially abundant OTUs and higher taxonomic units across geography and diet. Differentially abundant OTUs and higher taxonomic units across geography.

Relative abundances of microeukaryotic taxa detected by ITS2 analysis of DNA or cDNA from stool. Relative abundances of microeukaryotic taxa detected by.

Shifts in the microbial community compositions of the control and antibiotic groups. Shifts in the microbial community compositions of the control and.

Relationship between relative abundance and transcription/abundance ratio (logarithmic scales) of OTUs (brown), ZOTUs (turquoise), and population genomes.

Microbial differences found between TPC- and PBS-treated mice with lupus. Microbial differences found between TPC- and PBS-treated mice with lupus. (A)

(A and B) Unweighted (A) and weighted (B) UniFrac clustering of three 16S rRNA hypervariable regions using fragment insertion SATé-enabled phylogenetic.

Change in fluorescence of C. neoformans upon addition of DM262.

Proportions of Saccharomyces and Pichia in olive fermentations.

The Amazon viral scaffolds and viral genomes most important for river and plume segregation. The Amazon viral scaffolds and viral genomes most important.

The transposcriptome in preimplantation development.

Comparison of levels of microbiome diversity by BMI, stratified by geography. Comparison of levels of microbiome diversity by BMI, stratified by geography.

OTU and family-level changes in murine gut as a result of acarbose feeding on a high-starch diet. OTU and family-level changes in murine gut as a result.

Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.

Functional microbiome differences between high-fat and standard chow diets. Functional microbiome differences between high-fat and standard chow diets.

ITS rRNA gene locus. ITS rRNA gene locus. Schematic of the eukaryotic ribosomal gene cluster. The SILVA database contains sequences of the 18S gene, while.

Heterotrophic and autotrophic particle (cell) abundance in water column. Heterotrophic and autotrophic particle (cell) abundance in water column. Small.

OMV-enriched proteins show a conserved N-terminal LES motif.

CT production profiles of single-SNP strains and double-, triple-, and quadruple-SNP combination strains. CT production profiles of single-SNP strains.

PCoA plots of subgingival samples with disease classification overlaid

Comparison of community fungal and bacterial/archaeal diversity levels

Identification of PVM candidates by quantitative mass spectrometry.

Comparison between early-life and year 2 AMR levels.

LEfSe comparison analysis between the control and ciprofloxacin or vancomycin-imipenem groups at the end of antibiotic treatment (A or B, respectively)

Beta-diversity analyses of microbial taxa recovered from ATM keypads.

Normalized abundance of tetracycline resistance genes in Swedish infants by AMR++. Normalized abundance of tetracycline resistance genes in Swedish infants.

Bipartite co-occurrence networks were generated in CoNet and visualized in Cytoscape to display significant strong positive and negative co-occurring relationships.

Relative proportions of taxa and UPGMA hierarchical clustering of the mock communities. Relative proportions of taxa and UPGMA hierarchical clustering.

Relative abundance of taxa in the 16S rRNA PCR amplicon and gDNA mock communities. Relative abundance of taxa in the 16S rRNA PCR amplicon and gDNA mock.

Acarbose reversibly changes the structure of the murine gut community.

Distinct antibiotic pretreatments have differential impacts on C

Northern shovelers may have unique microbiome differences with respect to IAV infection, relative to the other duck species. Northern shovelers may have.

GBM 112 and GBM 144 cells infected in vitro with HCMV resist growth inhibition by temozolomide. GBM 112 and GBM 144 cells infected in vitro with HCMV resist.

Batch variation of formulations from two products by two different genomic-scale techniques. Batch variation of formulations from two products by two different.

Presentation transcript:

Relative abundances of bacterial/archaeal groups in 16S rRNA data set. Relative abundances of bacterial/archaeal groups in 16S rRNA data set. (A) Microbial taxonomy summarized at phylum level. (B) Microbial taxonomy summarized at the class level; the legend displays only the top 15 most abundant taxa in the bar chart. Plots were generated in QIIME using abundance-filtered OTU tables with control OTUs subtracted. MH, Marble Hill; S., South; W., West. Holly M. Bik et al. mSphere 2016; doi:10.1128/mSphere.00226-16