Chapter One: Exploring Life

What is Biology Biology is the scientific study of life Biologists are moving closer to understanding: How a single cell develops into an organism How plants convert sunlight to chemical energy How the human mind works How living things interact in communities How life’s diversity evolved from the first microbes

Video: Seahorse Camouflage Life’s basic characteristic is a high degree of order Each level of biological organization has emergent properties Video: Seahorse Camouflage

Concept 1.1: Biologists explore life from the microscopic to the global scale The study of life extends from molecules and cells to the entire living planet Biological organization is based on a hierarchy of structural levels

A Hierarchy of Biological Organization Biosphere: all environments on Earth Ecosystem: all living and nonliving things in a particular area Community: all organisms in an ecosystem Population: all individuals of a species in a particular area Organism: an individual living thing

A Hierarchy of Biological Organization (continued) Organ and organ systems: specialized body parts made up of tissues Tissue: a group of similar cells Cell: life’s fundamental unit of structure and function Organelle: a structural component of a cell Molecule: a chemical structure consisting of atoms

Organs and organ systems Organisms The biosphere Organelles 1 µm Cell Ecosystems Cells Atoms Molecules 10 µm Communities Tissues 50 µm Populations Organs and organ systems Organisms

A Closer Look at Ecosystems Each organism interacts with its environment Both organism and environment affect each other

Ecosystem Dynamics The dynamics of an ecosystem include two major processes: Cycling of nutrients, in which materials acquired by plants eventually return to the soil The flow of energy from sunlight to producers to consumers

Energy Conversion Activities of life require work Work depends on sources of energy Energy exchange between an organism and environment often involves energy transformations In transformations, some energy is lost as heat Energy flows through an ecosystem, usually entering as light and exiting as heat

Sunlight Ecosystem Producers (plants and other photosynthetic LE 1-4 Sunlight Ecosystem Producers (plants and other photosynthetic organisms) Heat Chemical energy Consumers (including animals) Heat

A Closer Look at Cells The cell is the lowest level of organization that can perform all activities of life The ability of cells to divide is the basis of all reproduction, growth, and repair of multicellular organisms

LE 1-5 25 µm

The Cell’s Heritable Information Cells contain DNA, the heritable information that directs the cell’s activities DNA is the substance of genes Genes are the units of inheritance that transmit information from parents to offspring

inherited from both parents LE 1-6 Sperm cell Nuclei containing DNA Fertilized egg with DNA from both parents Embryo’s cells With copies of inherited DNA Egg cell Offspring with traits inherited from both parents

Each DNA molecule is made up of two long chains arranged in a double helix Each link of a chain is one of four kinds of chemical building blocks called nucleotides

Nucleus DNA Nucleotide Cell DNA double helix Single strand of DNA

Two Main Forms of Cells Characteristics shared by all cells: Enclosed by a membrane Use DNA as genetic information Two main forms of cells: Eukaryotic: divided into organelles; DNA in nucleus Prokaryotic: lack organelles; DNA not separated in a nucleus

Nucleus (contains DNA) 1 µm EUKARYOTIC CELL PROKARYOTIC CELL DNA (no nucleus) Membrane Membrane Cytoplasm Organelles Nucleus (contains DNA) 1 µm

Concept 1.2: Biological systems are much more than the sum of their parts A system is a combination of components that form a more complex organization Cells, organisms, and ecosystems are some examples of biological systems

The Emergent Properties of Systems Emergent properties result from arrangements and interactions within systems New properties emerge with each step upward in the hierarchy of biological order

The Power and Limitations of Reductionism Reductionism is reducing complex systems to simpler components that are easier to study The studies of DNA structure and the Human Genome Project are examples of reductionism

Systems Biology Systems biology seeks to create models of the dynamic behavior of whole biological systems An example is a systems map of interactions between proteins in a fruit fly cell Such models may predict how a change in one part of a system will affect the rest of the system

LE 1-10 Outer membrane and cell surface CELL Cytoplasm Nucleus

Systems biology uses three key research developments: High-throughput technology: methods to generate large data sets rapidly Bioinformatics: using computers and software to process and integrate large data sets Interdisciplinary research teams

Feedback Regulation in Biological Systems Regulatory systems ensure a dynamic balance in living systems Chemical processes are catalyzed (accelerated) by enzymes Many biological processes are self-regulating: the product regulates the process itself

Animation: Negative Feedback Animation: Positive Feedback In negative feedback, the accumulation of a product slows down the process itself In positive feedback (less common), the product speeds up its own production Animation: Negative Feedback Animation: Positive Feedback

A A Negative feedback Enzyme 1 Enzyme 1 B B Enzyme 2 C C Enzyme 3 D D LE 1-11 A A Negative feedback Enzyme 1 Enzyme 1 B B Enzyme 2 C C Enzyme 3 D D D D D D D D D D D

W W Enzyme 4 Enzyme 4 X X Positive feedback Enzyme 5 Enzyme 5 Y Y LE 1-12 W W Enzyme 4 Enzyme 4 X X Positive feedback Enzyme 5 Enzyme 5 Y Y Enzyme 6 Enzyme 6 Z Z Z Z Z Z Z Z Z Z Z Z Z Z Z Z Z Z Z

Concept 1.3: Biologists explore life across its great diversity of species Biologists have named about 1.8 million species Estimates of total species range from 10 million to over 200 million

Grouping Species: The Basic Idea Taxonomy is the branch of biology that names and classifies species into a hierarchical order Kingdoms and domains are the broadest units of classification

Species Genus Family Order Class Phylum Kingdom Domain Ursus LE 1-14 Species Genus Family Order Class Phylum Kingdom Domain Ursus americanus (American black bear) Ursus Ursidae Carnivora Mammalia Chordata Animalia Eukarya

The Three Domains of Life At the highest level, life is classified into three domains: Bacteria (prokaryotes) Archaea (prokaryotes) Eukarya (eukaryotes) Eukaryotes include protists and the kingdoms Plantae, Fungi, and Animalia

Bacteria Protists Kingdom Plantae Archaea Kingdom Fungi LE 1-15 Bacteria 4 µm Protists 100 µm Kingdom Plantae Archaea 0.5 µm Kingdom Fungi Kingdom Animalia

Unity in the Diversity of Life Underlying life’s diversity is a striking unity, especially at lower levels of organization In eukaryotes, unity is evident in details of cell structure

Cilia of windpipe cells LE 1-16a 15 µm 5 µm Cilia of Paramecium Cilia of windpipe cells

Cross section of cilium, as viewed with an electron microscope LE 1-16b 0.1 µm Cross section of cilium, as viewed with an electron microscope Cilia of Paramecium Cilia of windpipe cells

Concept 1.4: Evolution accounts for life’s unity and diversity The history of life is a saga of a changing Earth billions of years old

The evolutionary view of life came into sharp focus in 1859, when Charles Darwin published On the Origin of Species by Natural Selection “Darwinism” became almost synonymous with the concept of evolution

The Origin of Species articulated two main points: Descent with modification (the view that contemporary species arose from a succession of ancestors) Natural selection (a proposed mechanism for descent with modification) Some examples of descent with modification are unity and diversity in the orchid family

Natural Selection Darwin inferred natural selection by connecting two observations: Observation: Individual variation in heritable traits Observation: Overpopulation and competition Inference: Unequal reproductive success Inference: Evolutionary adaptation

Evolution of adaptations in the population LE 1-20 Population of organisms Hereditary variations Overproduction and competition Differences in reproductive success Evolution of adaptations in the population

Natural selection can “edit” a population’s heritable variations An example is the effect of birds preying on a beetle population

LE 1-21 Population with varied inherited traits Elimination of individuals with certain traits Reproduction of survivors Increasing frequency of traits that enhance survival and reproductive success

Bat wings are an example of adaptation Natural selection is often evident in adaptations of organisms to their way of life and environment Bat wings are an example of adaptation Video: Soaring Hawk

The Tree of Life Many related organisms have similar features adapted for specific ways of life Such kinships connect life’s unity and diversity to descent with modification Natural selection eventually produces new species from ancestral species Biologists often show evolutionary relationships in a treelike diagram [Videos on slide following the figure]

South American mainland LE 1-23 Large ground finch Large tree finch Small ground finch Large cactus ground finch Camarhynchus psittacula Geospiza magnirostris Geospiza fuliginosa Green warbler finch Gray warbler finch Sharp-beaked ground finch Woodpecker finch Medium tree finch Geospiza conirostris Medium ground finch Certhidea olivacea Certhidea fusca Geospiza difficilis Cactus ground finch Camarhynchus pauper Cactospiza pallida Small tree finch Mangrove finch Geospiza fortis Geospiza scandens Camarhynchus parvulus Cactospiza heliobates Seed eater Vegetarian finch Cactus flower eaters Seed eaters Platyspiza crassirostris Insect eaters Bud eater Ground finches Tree finches Warbler finches Common ancestor from South American mainland

Video: Albatross Courtship Ritual Video: Blue-footed Boobies Courtship Ritual Video: Galapágos Islands Overview Video Galapágos Marine Iguana Video: Galapágos Sea Lion Video: Galapágos Tortoise

Concept 1.5: Biologists use various forms of inquiry to explore life Inquiry is a search for information and explanation, often focusing on specific questions The process of science blends two main processes of scientific inquiry: Discovery science: describing nature Hypothesis-based science: explaining nature

Discovery Science Discovery science describes nature through careful observation and data analysis Examples of discovery science: understanding cell structure expanding databases of genomes

Types of Data Data are recorded observations Two types of data: Quantitative data: numerical measurements Qualitative data: recorded descriptions

Induction in Discovery Science Inductive reasoning involves generalizing based on many specific observations

Hypothesis-Based Science In science, inquiry usually involves proposing and testing hypotheses Hypotheses are hypothetical explanations

The Role of Hypotheses in Inquiry In science, a hypothesis is a tentative answer to a well-framed question A hypothesis is an explanation on trial, making a prediction that can be tested

Observations Question Hypothesis #1: Dead batteries Hypothesis #2: LE 1-25a Observations Question Hypothesis #1: Dead batteries Hypothesis #2: Burnt-out bulb

Test falsifies hypothesis Test does not falsify hypothesis LE 1-25b Hypothesis #1: Dead batteries Hypothesis #2: Burnt-out bulb Prediction: Replacing batteries will fix problem Prediction: Replacing bulb will fix problem Test prediction Test prediction Test falsifies hypothesis Test does not falsify hypothesis

Deduction: The “If…then” Logic of Hypothesis-Based Science In deductive reasoning, the logic flows from the general to the specific If a hypothesis is correct, then we can expect a particular outcome

A Closer Look at Hypotheses in Scientific Inquiry A scientific hypothesis must have two important qualities: It must be testable It must be falsifiable

The Myth of the Scientific Method The scientific method is an idealized process of inquiry Very few scientific inquiries adhere rigidly to the “textbook” scientific method

A Case Study in Scientific Inquiry: Investigating Mimicry in Snake Populations In mimicry, a harmless species resembles a harmful species An example of mimicry is a stinging honeybee and a nonstinging mimic, a flower fly

Flower fly (nonstinging) LE 1-26 Flower fly (nonstinging) Honeybee (stinging)

This case study examines king snakes’ mimicry of poisonous coral snakes The hypothesis states that mimics benefit when predators mistake them for harmful species The mimicry hypothesis predicts that predators in non–coral snake areas will attack king snakes more frequently than will predators that live where coral snakes are present

North Carolina South Carolina LE 1-27 Scarlet king snake Key Range of scarlet king snake Range of eastern coral snake Eastern coral snake North Carolina South Carolina Scarlet king snake

Field Experiments with Artificial Snakes To test this mimicry hypothesis, researchers made hundreds of artificial snakes: An experimental group resembling king snakes A control group resembling plain brown snakes Equal numbers of both types were placed at field sites, including areas without coral snakes After four weeks, the scientists retrieved the artificial snakes and counted bite or claw marks The data fit the predictions of the mimicry hypothesis

(a) Artificial king snake LE 1-28 (a) Artificial king snake (b) Artificial brown snake that has been attacked

North Carolina South Carolina LE 1-29 17% In areas where coral snakes were absent, most attacks were on artificial king snakes. 83% Key North Carolina % of attacks on artificial king snakes % of attacks on brown artificial snakes South Carolina Field site with artificial snakes 16% 84% In areas where coral snakes were present, most attacks were on brown artificial snakes.

Designing Controlled Experiments Scientists do not control the experimental environment by keeping all variables constant Researchers usually “control” unwanted variables by using control groups to cancel their effects

Limitations of Science The limitations of science are set by its naturalism Science seeks natural causes for natural phenomena Science cannot support or falsify supernatural explanations, which are outside the bounds of science

Theories in Science A scientific theory is much broader than a hypothesis A scientific theory is: broad in scope general enough to generate new hypotheses supported by a large body of evidence

Model Building in Science Models are representations of ideas, structures, or processes Models may range from lifelike representations to symbolic schematics

From body From lungs Right atrium Left atrium Right ventricle Left To lungs To body

The Culture of Science Science is an intensely social activity Both cooperation and competition characterize scientific culture

Science, Technology, and Society The goal of science is to understand natural phenomena Technology applies scientific knowledge for some specific purpose

Concept 1.6: A set of themes connects the concepts of biology Biology is the science most connected to the humanities and social sciences Underlying themes provide a framework for understanding biology