0 Microbial Gene Research & Resources Facility (MGRRF) Institute for Molecular & Cellular Therapies (IMCT) Biomolecular & Biomedical Sciences (BBS) New.

Slides:

Advertisements

Similar presentations

We Can Read About Mixing Colors

Advertisements

The Build-up of the Red Sequence at z

Characterization of nitrogenase gene distribution and activity in WCA-2A periphyton Puja Jasrotia Image source:

METAGENOMICS OF CYANOBACTERIAL BLOOMS Phillip B Pope and Bharat K.C. Patel Microbial Gene Research and Resources Facility, School of Biomolecular and Biomedical.

Characterizing and Classifying Prokaryotes

Chapter 26: Bacteria and Archaea: the Prokaryotic Domains CHAPTER 26 Bacteria and Archaea: The Prokaryotic Domains.

1 Prokaryotic Microbial Diversity Early attempts at taxonomy: all plants and animals Whitaker scheme (late 20th century): Five kingdoms –Animalia, Plantae,

 The relationship of an allele to the total number of alleles in a gene pool for a trait.  Expressed as a percent  Allele frequency can be used to.

Luciano Brocchieri, PhD Research Interests. Summary of Research Interests 1.Gene identification and genome annotation 2.The evolution of genome-sequence.

The MOBI Aerator in the Stockton Deep Water Ship Channel Gary M. Litton Russ Brown Marshall Haueter Stephanie Kong Nitrification in the San Joaquin River.

Nitrogen transformations include denitrification to N 2 O or N 2, oxidation of ammonium to nitrate, (nitrification) and anaerobic ammonia oxidation (anammox).

Lecture 21: Bacterial diversity and Microbial Ecology Dr Mike Dyall-Smith Haloarchaea Research Lab., Lab 3.07 Ref: Ref: Prescott, Harley.

Understanding Algal Biodiversity and Function: Comparison of in situ versus ex situ Analyses Rocky Patil Advisor: Dr. Rachael Morgan-Kiss.

Jenifer Unruh VCU-HHMI Summer Scholars Program Mentor: Dr. Shozo Ozaki.

Biogeography of the coral Montastraea cavernosa in the Caribbean basin and associated changes in its microbial communities Jessica K. Jarett 1*, Cara L.

Operating as a User Facility Science GEBA / Bergey Pilot Project (part 1) Update.

Characterization of microbial communities in a fluidized-pellet-bed bioreactor by DGGE analysis As an extension of the fluidized pellet bed operation used.

Microbial Diversity.

Prokaryotic Microbial Diversity

0 Microbial Gene Research & Resources Facility (MGRRF) Institute for Molecular & Cellular Therapies (IMCT) Biomolecular & Biomedical Sciences (BBS) Australia.

Molecular Microbial Ecology Lecture 1 Professor Ralph Kirby Faculty of Life Sciences Extension 5511 Room B322.

Observation Hypothesis Experimental Design (including Methods) Results Inference Camp Wildness 2004 Ward Lab Research Project.

Analysis of Hot Spring Microbial Mat

Molecular Microbial Ecology

Cassini Spacecraft found older terrains and major fractures on moon Enceladus Course crystalline ice which will degrade over time. Must be < 1000 years.

Nutrients and Microbial Communities in Extreme Environments Christie Sabin Mentors: Amisha Poret-Peterson Ariel Anbar University of Arizona April 21, 2012.

Diversity of uncultured candidate division SR1 in anaerobic habitats James P. Davis Microbial & Molecular Genetics Oklahoma State University.

Microbial diversity: a super quick intro, I swear Meade Krosby.

Measuring the T m of DNA GC pairs connected by 3 H bonds AT pairs connected by 2 H bonds * Higher GC content  higher T m Absorbance of 260 nM light (UV)

基本建设局 Bureau of Capital Construction, CAS Institute of Tibetan Plateau Research, CAS 投资处 Yongqin Liu, Tandong Yao,

Dichotomy of major bacterial phyla inferred from gene arrangement comparisons Takashi Kunisawa Science University of Tokyo Noda , Japan CODATA06.

Identify gene markers for different taxonomic groups in Archaea and Bacteria Genomes Dongying Wu 1,2, Jonathan A. Eisen 1,2 1. DOE Joint Genome Institute,

Homework: Pigs, Whales and Hippos!. Chapter 20 Molecular Clocks and the Three Domains of Life.

Figure S1 The North Sea beach of the Dutch barrier island of Schiermonnikoog (N53°30’ E6°10’). The transect indicates the chronosequence along the developing.

Big Picture Of ≈1.7 million species classified so far, roughly 6000 are microbes True number of microbes is obviously larger than 6000 “Imagine if our.

The Earth Is Old! Radiometric dating of rocks (amîtsoq gneisses) from Western Greenland Similar results from Australia, Wisconsin, Africa and Russia.

MICROBIAL CALCIFICATION IN SUBSURFACE ENVIRONMENTS

Chapter 11: The Prokaryotes: Domains Bacteria and Archaea

Sequencing the World of Possibilities for Energy & Environment.

Microbial Diversity in Drain Hole Waters of the Henderson Mine John R. Spear Jason Sahl Division of Environmental Science and Engineering Colorado School.

Tree of Life Phylogeny Based on Analysis of rRNA Sequence.

Prochlorococcus : probes; distribution; Chile dot blots; Indian Ocean cruise Synechococcus cultures : status; multilocus sequencing approach 13 C/ 14 C.

Major characteristics used in taxonomy

Using Online Resources. Dave Westenberg Associate Professor of Biology Missouri S&T Using Available Online Resources to Facilitate the Flipped Classroom.

Molecular Clocks and Continued Research

Supplementary Information Formate-H 2 -lyase, a Driver of Hydrogenotrophic Processes in the Root-zone of a Methane-emitting Fen Sindy Hunger, Oliver Schmidt,

The Evolution of Microbes and Their Genomes: A Phylogenomic Perspective Jonathan A. Eisen October 3, 2009.

Honors Project May 2, 2013 By: Alyssa Rogers Mentor: Dr. Christopher Lane BROWN ALGAL DIVERSITY IN BERMUDA REVEALED USING MOLECULAR TOOLS.

Metagenomic survey of a biological tannery wastewater treatment plant in Modjo, Ethiopia Adey Feleke Desta*, Seyoum Leta***, Francesca Stomeo**, Joyce.

CORRELATION BETWEEN HYDROLOGICAL, GEOCHEMICAL AND MICROBIOLOGICAL PROCESSES IN GROUNDWATER-STREAM WATER MIXING ZONE Heejung Kim, Seong-Sun Lee, Yunjung.

Soil Microbiome of Native and Invasive Marsh Grasses in Blackbird Creek, Delaware Lathadevi K.Chintapenta 1#, Gulnihal Ozbay 1#, Venu Kalavacharla 1* Figure.

Microbiology of Sulfate- Reducing Passive Treatment Systems Amy Pruden 2, Sage R. Hiibel 1, Luciana P. Pereyra 2, Laura Y. Inmann 1, Nella Kashani 1, Kenneth.

Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments Xinjun Zhang.

Biodiversity and Variation

a) SW PO TFS AHEC HAFS PSMS BSM RSM POCR Relative abundance

115th General Meeting Of The American Society For Microbiology

Biogeochemistry of Wetlands

Unit 1 - The Origins of Life

Supplemental material for Wang et al

Sup. Fig. 1 Sample set #1 WT mice (n = 3) Sample set #2

Volume 67, Issue 4, Pages (April 2015)

Microbial flora of giant pandas.

Chapter 20 Three Domains of Life.

What Color is it?.

Diversity of Soil Microbes

DNA Sequencing.

Box plots displaying the median, minimum, maximum, and first and third quartiles of the percentage of the 25 members of the core microbiome detected in.

Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.

Unit 1 - The Origins of Life

General overview of the bioinformatic pipelines for the 16S rRNA gene microbial profiling and shotgun metagenomics. General overview of the bioinformatic.

Presentation transcript:

0 Microbial Gene Research & Resources Facility (MGRRF) Institute for Molecular & Cellular Therapies (IMCT) Biomolecular & Biomedical Sciences (BBS) New Lorne Bore (RN 17263). Depth 1613 m, Temp: 89 o C, pH 8.5); Flow rate: 7.56 L/sec; Chemistry: typical Na-HCO 3 -Cl Brisbane Sampling at bore source Sampling below bore source

1 Microbial Gene Research & Resources Facility (MGRRF) Institute for Molecular & Cellular Therapies (IMCT) Biomolecular & Biomedical Sciences (BBS) The New Lorne Bore (RN 17263) runoff channel Temperature specific microbial colonisation occurs in the New Lorne bore run off channel in a temp gradient (88 o C to ambient) Sampling microbial mats

2 Microbial Gene Research & Resources Facility (MGRRF) Institute for Molecular & Cellular Therapies (IMCT) Biomolecular & Biomedical Sciences (BBS) Grey Filaments at 75ºC Red Filaments at 66ºC Brown Filaments at 52ºC Green Filaments at 57ºC 4 spatially distinct colored microbial mats colonise New Lorne bore runoff channel at different temperatures

5 Samples (4 mats + source sample) HMW DNA extracted 16S rRNA genes cloned 400 clones studied to determine phylogroups Representative of each phylogroup sequenced Phylogenetic Reconstruction

D ictyoglomus Thermodesulfobacteria Bacteroides Thermomicrobia Aquifex Chrysiogenetes Thermotoga   T hermales Firmicutes Chlamydia Deferribacter Nitrospir a  Cyanobacteria Actinobacteria V errucomicrobia Acidobacteria Planctomycetes Fibrobacter   Spirochetes Fusiforms Proteobacteria Microbial diversity of the New Lorne bore & the 4 runoff channel microbial mats (10 / 21 kingdoms)

5 Microbial Gene Research & Resources Facility (MGRRF) Institute for Molecular & Cellular Therapies (IMCT) Biomolecular & Biomedical Sciences (BBS) The microbial diversity profile of the 4 microbial mats

Quantitative diversity based on clones (in %)