On the abundance of chiral crystals (An optimistic lecture for the conclusion of the conference) David Avnir Institute of Chemistry The Hebrew University.

Slides:



Advertisements
Similar presentations
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Advertisements

Trend for Precision Soil Testing % Zone or Grid Samples Tested compared to Total Samples.
Trend for Precision Soil Testing % Zone or Grid Samples Tested compared to Total Samples.
AGVISE Laboratories %Zone or Grid Samples – Northwood laboratory
Trend for Precision Soil Testing % Zone or Grid Samples Tested compared to Total Samples.
Chapter 9 Chemical Quantities.
AP STUDY SESSION 2.
1
EuroCondens SGB E.
Worksheets.
Copyright © 2003 Pearson Education, Inc. Slide 1 Computer Systems Organization & Architecture Chapters 8-12 John D. Carpinelli.
By D. Fisher Geometric Transformations. Reflection, Rotation, or Translation 1.
Multiplication X 1 1 x 1 = 1 2 x 1 = 2 3 x 1 = 3 4 x 1 = 4 5 x 1 = 5 6 x 1 = 6 7 x 1 = 7 8 x 1 = 8 9 x 1 = 9 10 x 1 = x 1 = x 1 = 12 X 2 1.
Division ÷ 1 1 ÷ 1 = 1 2 ÷ 1 = 2 3 ÷ 1 = 3 4 ÷ 1 = 4 5 ÷ 1 = 5 6 ÷ 1 = 6 7 ÷ 1 = 7 8 ÷ 1 = 8 9 ÷ 1 = 9 10 ÷ 1 = ÷ 1 = ÷ 1 = 12 ÷ 2 2 ÷ 2 =
Factors, Primes & Composite Numbers
David Burdett May 11, 2004 Package Binding for WS CDL.
Jeopardy Q 1 Q 6 Q 11 Q 16 Q 21 Q 2 Q 7 Q 12 Q 17 Q 22 Q 3 Q 8 Q 13
Jeopardy Q 1 Q 6 Q 11 Q 16 Q 21 Q 2 Q 7 Q 12 Q 17 Q 22 Q 3 Q 8 Q 13
CALENDAR.
FACTORING ax2 + bx + c Think “unfoil” Work down, Show all steps.
ASCII stands for American Standard Code for Information Interchange
Around the World AdditionSubtraction MultiplicationDivision AdditionSubtraction MultiplicationDivision.
The 5S numbers game..
突破信息检索壁垒 -SciFinder Scholar 介绍
Break Time Remaining 10:00.
The basics for simulations
Factoring Quadratics — ax² + bx + c Topic
PP Test Review Sections 6-1 to 6-6
1 University of Utah – School of Computing Computer Science 1021 "Thinking Like a Computer"
Numerical Analysis 1 EE, NCKU Tien-Hao Chang (Darby Chang)
Copyright © 2012, Elsevier Inc. All rights Reserved. 1 Chapter 7 Modeling Structure with Blocks.
Progressive Aerobic Cardiovascular Endurance Run
1..
MaK_Full ahead loaded 1 Alarm Page Directory (F11)
Chapter 5 Test Review Sections 5-1 through 5-4.
Karnaugh Maps ECEn/CS 224.
Before Between After.
25 seconds left…...
: 3 00.
5 minutes.
Watkins/Fronczek - Rotational Symmetry 1 Symmetry Rotational Symmetry and its Graphic Representation.
1 hi at no doifpi me be go we of at be do go hi if me no of pi we Inorder Traversal Inorder traversal. n Visit the left subtree. n Visit the node. n Visit.
Analyzing Genes and Genomes
We will resume in: 25 Minutes.
Static Equilibrium; Elasticity and Fracture
Essential Cell Biology
A SMALL TRUTH TO MAKE LIFE 100%
A small truth to make life 100%
Converting a Fraction to %
Created by Professor William Tam & Dr. Phillis Chang Ch Chapter 20 Amines.
Resistência dos Materiais, 5ª ed.
Clock will move after 1 minute
A SMALL TRUTH TO MAKE LIFE 100%
PSSA Preparation.
& dding ubtracting ractions.
Essential Cell Biology
Physics for Scientists & Engineers, 3rd Edition
Energy Generation in Mitochondria and Chlorplasts
Select a time to count down from the clock above
Cooperative Summer School School Enrichment Odyssey of the Mind Environmental Education Extended Education.
1.step PMIT start + initial project data input Concept Concept.
1 Dr. Scott Schaefer Least Squares Curves, Rational Representations, Splines and Continuity.
Chart Deception Main Source: How to Lie with Charts, by Gerald E. Jones Dr. Michael R. Hyman, NMSU.
In this section we’ll consider space groups Pm, Cm, Pc and Cc
Chirality: An Overview
Schutzvermerk nach DIN 34 beachten 05/04/15 Seite 1 Training EPAM and CANopen Basic Solution: Password * * Level 1 Level 2 * Level 3 Password2 IP-Adr.
Chiral Nanoporosity in silicates Institute of Chemistry The Hebrew University of Jerusalem Nanocenter meeting, Ashkelon, David Avnir.
The chirality of the SiO 4 building block in materials David Avnir Institute of Chemistry, The Hebrew University, Jerusalem Special Symposium on Chemistry.
Presentation transcript:

On the abundance of chiral crystals (An optimistic lecture for the conclusion of the conference) David Avnir Institute of Chemistry The Hebrew University of Jerusalem, Israel With Chaim Dryzun Department of Chemistry, ETH Zürich Lugano Campus, Switzerland Chirality 2012, Fort Worth, Texas June 10 - June 13, 2012

The unrecognized high abundance of chiral crystals * ~23% of all non-biological crystals are chiral (compared to only ~10% of all non-biological molecules ) * Only ~6% of these are labelled as chiral In numbers: there are out there ~100,000 crystals the chirality of which has been ignored It means that: The library from which one can select enantioselective catalysts, sensing materials, and chromatographic materials is by far larger than envisaged so far.

Questions to be addressed: # Why was it overlooked? # Why are chiral crystals much more common than chiral molecules? # What are the practical implications of this finding?

What is a chiral crystal? What may be chiral in a crystal? # The molecule # The asymmetric unit # The unit cell # The space-group # The macroscopic habit H. D. Flack, Helv. Chim. Acta, 2003, 86, 905

Class I: The 165 space groups which contain at least one improper operation (inversion, mirror, glide or S n operations). Always achiral (although the 3D asymmetric unit is always chiral) The classes of space groups P m

Class II: 22 chiral-helical space groups (11 enantiomeric pairs) Contain at least one screw axis which is not the 2 1 -screw axis. Always chiral even if the AU is achiral

The confusing class III: 43 space groups that contain only proper rotations and the 2 1 -screw rotation Examples: P 2 1, P 4, the abundant P Despite the fact that there are no reflections, inversions etc., these space groups are achiral Despite the fact that these space groups are achiral, the crystals which pack by them are always chiral How can that be?

# P2 1 is achiral because reflection of this mathematical entity results in unchanged P2 1 # P6 1 is chiral because its reflection results in P6 5 Despite the fact that there are no reflections, inversions etc., these 43 space groups are achiral In general, a crystal may be chiral and yet belong to one of these 43 achiral space groups

Despite the fact that these space groups are achiral, the crystals which pack by them are chiral The reason for: * An AU in 3D is always chiral. A chiral AU on which only proper operations are applied, must result in a chiral crystal. * If the AU is achiral (0D, 1D, 2D) – then it will usually pack in a space group which has that achiral operation, coinciding with it.

Class II and Class III are collectively known as the 65 Sohncke groups II: 22 of the 65 are chiral (helical) III: 43 of the 65 are achiral Bottom line: All of the 65 Sohncke groups - and only these groups - represent chiral crystals The Sohncke symmetry space groups

Wrong H. D. Flack, Helv. Chim. Acta, 2003, 86, 905

To remove the confusion we suggest: Class I: 165 improper-achiral groups Always an achiral crystal Class II: 22 helical-chiral groups Always a chiral crystal Class III: 43 proper-achiral groups Always a chiral crystal

If the space group contains only proper operations, the crystal is chiral If the space group contains only proper operations, the crystal is chiral Proper operations: rotations, screw-rotations and translations Achiral crystal - improper operations (mirror, inversion, S 4, S 6 or glide) Simple tests for the chirality of a crystal Santiago Alvarez’ Criterion : A crystal is chiral if the symbol of its space group is composed only of a capital letter and simple numbers

Number of reported non-biological crystal structures (CSD, ICSD): 574,000 Chiral structures: 131,000 % of all non-biological chiral crystals: 23% Number of structures reported as chiral: 35,000 (6% only) Number of chiral crystals not recognized as such: ~96,000 The numbers

Measuring the degree of chirality

G: The achiral symmetry point group which minimizes S(G) Achiral molecule: S(G) = 0 The more chiral the molecule is, the higher is S(G) The continuous chirality measure (CCM) Mezey, Gilat, Kauzman, Osipov, Mislow, Ruch, Richards, Maruani

The most chiral monodentate complex With S. Alvarez, Europ. J. Inorg, Chem., 1499 (2001)

The chirality of a unit-cell 1 sec S(C 2 )=0.00 S(chirality)=4.51 S(C i )= atoms bis((2-phenoxo)-bis(triphenylphosphine)-copper), C 84 H 70 Cu 2 O 2 P 4 (HEZXEP (P2)); Osakada, K.; Takizawa, T.; Tanaka, M.; Yamamoto, T. J. Organometallic Chem., 1994, 473,

Le Chatelier, H. Compt. Rend de I'Acad. Sciences 1889, 109, 264. The optical rotation of quartz: More than 120 years ago Le Chatelier and his contemporaries

Temperature (°K)  Le Chatelier   t  Chirality, SiSi 4 Chirality  t   120 years later: an exact match with quantitative chirality changes D. Yogev, Tetrahedron: Asymmetry 18, 2295 (2007) SiSi 4

Examples of publications on chiral crystals where terms such as “Chirality”, “Chiral”, “Optical activity”, etc., do not appear in the title, abstract and the whole text. All are of class III, the 43 proper-achiral space groups A chemist running a search which has any of these keywords, will simply miss 100,000 structures!

Example 1: C 25 H 18 O 2 CSD: ABUCOP, space group: P (#18), CCM-UC = S. Apel, S. Nitsche, K. Beketov, W. Seichter, J. Seidel, E. Weber, J. Chem. Soc., Perkin Trans. 2, 2001, 7, 1212

CCM of one molecule = 2.82 Example 1: C 25 H 18 O 2

Example 2: C 12 H 40 Cs 4 N 4 Si 4 CSD: JUFWUK, space group: P 3 2 (#195), CCM-UC = 0.47 Tesh, K. F.; Jones, B. D.; Hanusa, T. P.; Huffman, J.C. J. Am. Chem. Soc. 1992, 114, 6590.

CCM of one molecule = 0.47 Example 2: C 12 H 40 Cs 4 N 4 Si 4

Example 3: C 16 H 12 N 2 O 2 CSD: BIXLOJ, the most common proper-achiral group: P ,(#19) CCM of the UC = 2.01

Example 3: C 16 H 12 N 2 O 2 (CSD code: BIXLOJ ) Space group: P (#19) CCM of one molecule inside the crystal = 0.19

Example 4: NH 3, Ammonia Space group: P (#198), UC-CCM = 1.89, CCM one molecule = 0 The terms “chirality”, “optical activity” etc’ do not appear in ANY of the publications on ammonia crystals ! Boese, R.; Niederpruem, N.; Blaeser, D.; Maulitz, A.H.; Antipin, M.; Yu.; Mallinson, P.R.J. Phys. Chem. B, 1997, 101, 5794–5799.

Example 5: Crystallization of a racemate leads to a P21 chiral crystal The pair of enantiomers in the AU are related by pseudo-inversion: the phenyl rings, which are twisted differently Steinberg, A., Ergaz, I., Toscano, R.A., Glaser, R Cryst. Growth Des. 11, (±)-(1RS,3SR,4RS)-1- Phenyl-cis-3,4-butano- 3,4,5,6-tetrahydro-1H- 2,5- benzoxazocine hydrochloride

Why are chiral crystals much more common than chiral molecules? % of all non-biological chiral crystals: 23% % of all non-biological molecules: ~10% # Solution-achiral molecules need not crystallize in their equilibrium achiral structure # They provide a very rich library of chiral conformers, which is the source of the abundance of chiral crystals

Why was it overlooked? * The confusion, even in text books, of what is a chiral crystal. * For a crystallographer the chirality maybe obvious from the space-group. The cost: Chemists searching “chiral” will miss it. * Crystallization from a racemic mixture results in a mixture of right- and left-handed crystals which needs to be separated

Practical aspects: Chiral Silicate Zeolites Most silicate-zolites are highly symmetric ZSM-5, a silicate zeolite: Na n Al n Si 96-n O H 2 O

Chiral zeolites Prime importance: * Enantioselective catalysis * Enantiomers separation * Enantioselective sensing Known: Zeolite-like, open-pore crystals, MOF’s, etc. Out of over 700 zeolite structures only 5 are recognized as chiral Desired: Chiral aluminosilicate zeolites Only one was reported

We found 21(!) chiral silicate zeolites which have been under the nose all the time! a. Goosecreekite. b. Bikitaite. c. The two enantiomeric forms of Nabesite Ch. Dryzun et al, J. Mater. Chem., 19, 2062 (2009) Editor’s Choice, Science, 323, 1266 (2009)

Out of 120 classical silicate zeolites, we found 21 chiral zeolites, that were not recognized as such That is very close to the 23% general abundance we found All belong to the non-helical Sohncke space groups

Goosecreekite (GOO) Chiral zincophosphate I (CZP) α-Quartz TT’ SBU A.U Unit cell The chirality values are comparable or larger than the chirality values of the known chiral zeotypes and of quartz

Adsorption of D-histidine (the lower curve) or L-histidine (the higher curve) on Goosecreekite (GOO): The heat flow per injection The isothermal titration calorimetry (ITC) experiment L-histidine With Y. Mastai and A. Shvalb, Bar-Ilan

Conclusion There are some 100,000 unrecognized chiral crystals out there, waiting to be utilized for enantioselective catalysis, sensing, and separation. C. Dryzun and D. Avnir, Chem. Commun., 2012, 48, 5874–5876, Special Chirality web themed issue