10 de abril de 2014 Cloud Services for Projects in Bioinformatics: Technical Considerations and Business Fernando Barraza Omicsco Universidad de San Buenaventura.

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Presentation transcript:

10 de abril de 2014 Cloud Services for Projects in Bioinformatics: Technical Considerations and Business Fernando Barraza Omicsco Universidad de San Buenaventura Cali

10 de abril de 2014 Agenda What is a Cloud Computing? Main Architecture of the Cloud and the Bioinformatic Business Aspects A Bioinformatic Platform on the Cloud Concerns and Opportunities

10 de abril de 2014 Main Architecture of the Cloud

10 de abril de 2014 Imaged by Prof. ZHANG Zhang

10 de abril de 2014 Business Aspects Where is the Market? What are user needs? What is my business model? Who are the players?

10 de abril de 2014 Source: Eagle Genomics Bioinformatics Studies

10 de abril de 2014 Source: Eagle Genomics How are Bioinformatics Studies Delivered?

10 de abril de 2014 Source: Eagle Genomics Perceptions on bioinformatics Tools

10 de abril de 2014 Cloud Requires Architectural Shift single instance – multi tenancy

10 de abril de 2014 Product vs. Service

10 de abril de 2014 Who are the PaaS players Bitnami Cloud Amazon Elastic Beanstalk Slide by Srini Kumar, VP MSat

10 de abril de 2014 Bioinformatics and other Tools Databases An essential Bioinformatics Cloud Platform Public & Private Online Databases (EMBL, Uniprot, Genomes, etc.) Data Files Searching, Browsing, Annotation (Blast, Clustal, etc.) Biomaterial Adquisition and Generation Other Local Databases Executing User Wet Lab Storage and Management Processing, Visualization and Analysis LIMS CMS Metadata Browsing Pipelines (Galaxy, etc) Software Persistent Data Soure: Imaged by Omicsco for Gebix Project

10 de abril de 2014 Bioinformatics in Cloud - Maturity Model Started with small and scripted applications experimenting with Cloud Services Copy-Paste and Data Files manipulation Use of predefined Tools and Pipelines Started with small and scripted applications experimenting with Cloud Services Copy-Paste and Data Files manipulation Use of predefined Tools and Pipelines Move to a Hybrid model, where the Cloud Services will integrate with Data Sets in-house Linked with Public Biological Databases Enhanced Pipelines Move to a Hybrid model, where the Cloud Services will integrate with Data Sets in-house Linked with Public Biological Databases Enhanced Pipelines Streamlining of pipelines in a Multi-Instance Environment. Use of biocomputing ‘appliances’ Persistent and Large Ubiquitous Storage Streamlining of pipelines in a Multi-Instance Environment. Use of biocomputing ‘appliances’ Persistent and Large Ubiquitous Storage

10 de abril de 2014 Expected features on a bioinformatics appliances Availability of scientific validation of the tools through publication/peer review Computational efficiency and scalability Ease of maintenance and installation Ease of data manipulation/visualization (Do not discard command-line tool !! ) Plug & Play for Workflow Platforms (APIs and Standard)

10 de abril de 2014 Concerns and Opportunities Lack of Control, Security and Data Privacy Service Level Agreements & Standards Compliance New application model costs/adoption Data Manipulation still is a pain !! (Web Semantics technologies ?) Needs for new algorithms to improve performance (big data ?)

10 de abril de 2014 Questions ?