Plateforme de Calcul pour les Sciences du Vivant Embrace WP3 meeting Vincent Breton Chargé de Recherches au CNRS.

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Presentation transcript:

Plateforme de Calcul pour les Sciences du Vivant Embrace WP3 meeting Vincent Breton Chargé de Recherches au CNRS

Plateforme de Calcul pour les Sciences du Vivant V. Breton Embrace WP3 meeting 2 08/06/2005 Introduction WP3 goal: initiate a grid-based infrastructure for bioscientists –Making available most of the popular databases and software products –Taking away the need for maintaining local copies of databases and software –Taking advantage of the existing european national and international grid infrastructures and the services they provide

Plateforme de Calcul pour les Sciences du Vivant V. Breton Embrace WP3 meeting 3 08/06/2005 WP3.1 Technology recommendation and watch Objectives –Recommendation for technological choice to the Content Integration work packages and to the Tools Integration work package at project month 18 –Technology watch during the project lifetime as grid technology is in constant and quick evolution Description of work –Evaluation of existing technologies for data and tools integration and deployment –Evaluation of existing technologies against user/provider requirements Issues –Which technologies to evaluate ?  Shall we look at all the middlewares available or only at the middleware deployed on production environments –Against which requirements ?

Plateforme de Calcul pour les Sciences du Vivant V. Breton Embrace WP3 meeting 4 08/06/2005 WP3.2 test problems analysis, deployment and evaluation Objectives: deployment of 3 test cases –Distribution and update of biological data bases in a grid environment, led by BMC –grid portal BioASP, led by CMBI –Computer intensive applications, led by SIB Description of work –Analysis of test cases –Deployment of test cases –Methodologies for evaluation –Evaluation Issues –Expression of requirements from test cases (needed for WP3.1, evaluation of mw) –How to start ? Which test cases to deploy first ? Where ?

Plateforme de Calcul pour les Sciences du Vivant V. Breton Embrace WP3 meeting 5 08/06/2005 WP3.3 technology adoption and application deployment Objectives –To stand at the interface between the project and the grid infrastructures. –To evaluate existing infrastructures for the deployment of EMBRACE gridifed tools and data bases –Provide support to the technology adopted within the project Description of work –Evaluation of Grid infrastructures for bio-informatics applications –Security –Support to creation of virtual organisations and/or virtual services –Support to technology adoption Issues –Which infrastructures to evaluate (national grid initiatives, european projects,…) –How to evaluate the infrastructures (resources available to life sciences, …) –Interest to start Embrace VOs for test case deployment

Plateforme de Calcul pour les Sciences du Vivant V. Breton Embrace WP3 meeting 6 08/06/2005 Joint Embrace / EGEE Tutorial Where? Clermont-Ferrand (France) When? 25 th -27 th July 2005 How to register? (soon available) Registration fees? NO Preliminary agenda: –Monday (Noon – 19:00)  Taverna Tutorial –Tuesday – Wednesday (noon)  EGEE (Introduction to Grid, LCG2.x.x, gLite, Hands-on) Who? Embrace Post-docs, EGEE Biomed People

Plateforme de Calcul pour les Sciences du Vivant V. Breton Embrace WP3 meeting 7 08/06/2005 Agenda Evaluation of middlewares deployed on grid infrastructures in Europe High level services and tools Interfacing high level services and tools with underlying middlewares WP3 test cases Open discussion