VIVO: Vision for Research Information, 2020 Brussels, September 10, 2012 Michael Conlon, PhD Clinical and Translational Science Institute University of.

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Presentation transcript:

VIVO: Vision for Research Information, 2020 Brussels, September 10, 2012 Michael Conlon, PhD Clinical and Translational Science Institute University of Florida

Learned a field, learned the scientific method, did science

Research Process 1972 Hypothesis Experiment Publication

Science and Scientists

Research Process 2012 HypothesisConsults Assemble Team Write proposal Get Funded Create Virtual Organi- zation Augment Data Systems Conduct Experi- ments Publish results Archive data

Six Trends

1. Rise of the small

2. Increasing volume of science PubMed new publications per year

The Problems Got Hard 3. Increasing complexity of scientific problems

Data Got Big (IDR Slide) 4. Data reuse grows

Lots of Competitors 2011 Shanghai ranking of world universities 5. Competition rises

6. Internet disintermediation of science continues

How can we know what is going on, build teams, solve data-driven problems?

Research Discovery ResearchDiscovery

… And the connections between them

VIVO: Data, Tools and Community

Simple tools for presentation, traversal, search

processOrg<-function(uri){ x<-xmlParse(uri) u<-NULL name<-xmlValue(getNodeSet(x,"//rdfs:label")[[1]]) subs<-getNodeSet(x,"//j.1:hasSubOrganization") if(length(subs)==0) list(name=name,subs=NULL) else { for(i in 1:length(subs)){ sub.uri<- getURI(xmlAttrs(subs[[i]])["resource"]) u<-c(u,processOrg(sub.uri)) } list(name=name,subs=u) } VIVO produces both HTML and RDF Software reads VIVO RDF and displays

Ontology Process

Community

ScienceMap. Examine collections of publications for individuals, work groups, institutions

Augmenting data

VIVO Searchlight

Mentoring

4 th Annual VIVO Conference August 14-15, 2013 St. Louis, Missouri, USA

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