Introduction of Markov Chain Monte Carlo Jeongkyun Lee.

Slides:



Advertisements
Similar presentations
Introduction to Monte Carlo Markov chain (MCMC) methods
Advertisements

02/12/ a tutorial on Markov Chain Monte Carlo (MCMC) Dima Damen Maths Club December 2 nd 2008.
Bayesian Estimation in MARK
Ch 11. Sampling Models Pattern Recognition and Machine Learning, C. M. Bishop, Summarized by I.-H. Lee Biointelligence Laboratory, Seoul National.
Gibbs Sampling Qianji Zheng Oct. 5th, 2010.
Markov Chains Modified by Longin Jan Latecki
Computer Vision Lab. SNU Young Ki Baik An Introduction to MCMC for Machine Learning (Markov Chain Monte Carlo)
Bayesian Methods with Monte Carlo Markov Chains III
Markov Chains 1.
Markov Chain Monte Carlo Prof. David Page transcribed by Matthew G. Lee.
11 - Markov Chains Jim Vallandingham.
Introduction to Sampling based inference and MCMC Ata Kaban School of Computer Science The University of Birmingham.
10/11/2001Random walks and spectral segmentation1 CSE 291 Fall 2001 Marina Meila and Jianbo Shi: Learning Segmentation by Random Walks/A Random Walks View.
Lecture 3: Markov processes, master equation
1 Bayesian Methods with Monte Carlo Markov Chains II Henry Horng-Shing Lu Institute of Statistics National Chiao Tung University
Suggested readings Historical notes Markov chains MCMC details
Gaussian Processes to Speed up Hamiltonian Monte Carlo Matthieu Lê Journal Club 11/04/141 Neal, Radford M (2011). " MCMC Using Hamiltonian Dynamics. "
BAYESIAN INFERENCE Sampling techniques
CS774. Markov Random Field : Theory and Application Lecture 16 Kyomin Jung KAIST Nov
1 CE 530 Molecular Simulation Lecture 8 Markov Processes David A. Kofke Department of Chemical Engineering SUNY Buffalo
What if time ran backwards? If X n, 0 ≤ n ≤ N is a Markov chain, what about Y n = X N-n ? If X n follows the stationary distribution, Y n has stationary.
. PGM: Tirgul 8 Markov Chains. Stochastic Sampling  In previous class, we examined methods that use independent samples to estimate P(X = x |e ) Problem:
Computational statistics 2009 Random walk. Computational statistics 2009 Random walk with absorbing barrier.
Machine Learning CUNY Graduate Center Lecture 7b: Sampling.
Computational statistics, course introduction Course contents  Monte Carlo Methods  Random number generation  Simulation methodology  Bootstrap  Markov.
Today Introduction to MCMC Particle filters and MCMC
CS 561, Session 29 1 Belief networks Conditional independence Syntax and semantics Exact inference Approximate inference.
Monte Carlo Methods in Partial Differential Equations.
6. Markov Chain. State Space The state space is the set of values a random variable X can take. E.g.: integer 1 to 6 in a dice experiment, or the locations.
Bayes Factor Based on Han and Carlin (2001, JASA).
Introduction to MCMC and BUGS. Computational problems More parameters -> even more parameter combinations Exact computation and grid approximation become.
Machine Learning Lecture 23: Statistical Estimation with Sampling Iain Murray’s MLSS lecture on videolectures.net:
1 Gil McVean Tuesday 24 th February 2009 Markov Chain Monte Carlo.
Markov Chain Monte Carlo and Gibbs Sampling Vasileios Hatzivassiloglou University of Texas at Dallas.
An Efficient Sequential Design for Sensitivity Experiments Yubin Tian School of Science, Beijing Institute of Technology.
Markov-Chain Monte Carlo CSE586 Computer Vision II Spring 2010, Penn State Univ.
MTA SzTAKI & Veszprém University (Hungary) Guests at INRIA, Sophia Antipolis, 2000 and 2001 Paintbrush Rendering of Images Tamás Szirányi.
Bayesian Reasoning: Tempering & Sampling A/Prof Geraint F. Lewis Rm 560:
Tracking Multiple Cells By Correspondence Resolution In A Sequential Bayesian Framework Nilanjan Ray Gang Dong Scott T. Acton C.L. Brown Department of.
Numerical Bayesian Techniques. outline How to evaluate Bayes integrals? Numerical integration Monte Carlo integration Importance sampling Metropolis algorithm.
An Introduction to Markov Chain Monte Carlo Teg Grenager July 1, 2004.
Seminar on random walks on graphs Lecture No. 2 Mille Gandelsman,
Markov Chain Monte Carlo for LDA C. Andrieu, N. D. Freitas, and A. Doucet, An Introduction to MCMC for Machine Learning, R. M. Neal, Probabilistic.
Lecture #9: Introduction to Markov Chain Monte Carlo, part 3
The Markov Chain Monte Carlo Method Isabelle Stanton May 8, 2008 Theory Lunch.
Reducing MCMC Computational Cost With a Two Layered Bayesian Approach
CS774. Markov Random Field : Theory and Application Lecture 15 Kyomin Jung KAIST Oct
1 Chapter 8: Model Inference and Averaging Presented by Hui Fang.
The Unscented Particle Filter 2000/09/29 이 시은. Introduction Filtering –estimate the states(parameters or hidden variable) as a set of observations becomes.
CS Statistical Machine learning Lecture 25 Yuan (Alan) Qi Purdue CS Nov
Introduction: Metropolis-Hasting Sampler Purpose--To draw samples from a probability distribution There are three steps 1Propose a move from x to y 2Accept.
RECITATION 2 APRIL 28 Spline and Kernel method Gaussian Processes Mixture Modeling for Density Estimation.
Random Sampling Algorithms with Applications Kyomin Jung KAIST Aug ERC Workshop.
Density Estimation in R Ha Le and Nikolaos Sarafianos COSC 7362 – Advanced Machine Learning Professor: Dr. Christoph F. Eick 1.
How many iterations in the Gibbs sampler? Adrian E. Raftery and Steven Lewis (September, 1991) Duke University Machine Learning Group Presented by Iulian.
10 October, 2007 University of Glasgow 1 EM Algorithm with Markov Chain Monte Carlo Method for Bayesian Image Analysis Kazuyuki Tanaka Graduate School.
The Monte Carlo Method/ Markov Chains/ Metropolitan Algorithm from sec in “Adaptive Cooperative Systems” -summarized by Jinsan Yang.
Generalization Performance of Exchange Monte Carlo Method for Normal Mixture Models Kenji Nagata, Sumio Watanabe Tokyo Institute of Technology.
Markov Chain Monte Carlo in R
Introduction to Sampling based inference and MCMC
Markov Chain Monte Carlo methods --the final project of stat 6213
GEOGG121: Methods Monte Carlo methods, revision
Advanced Statistical Computing Fall 2016
Haim Kaplan and Uri Zwick
Multidimensional Integration Part I
Ch13 Empirical Methods.
Markov Chain Monte Carlo
Lecture 15 Sampling.
Robust Full Bayesian Learning for Neural Networks
Markov Networks.
Presentation transcript:

Introduction of Markov Chain Monte Carlo Jeongkyun Lee

 Usage  Why MCMC is called MCMC  MCMC methods  Appendix  Reference Contents 2

 Goal : 1) Estimate an unknown target distribution (or posterior) for a complex function, or 2) draw samples from the distribution. 1. Simulation  Draw samples from a probability governed by a system. 2. Integration / computing  Integrate or compute a high dimensional function 3. Optimization / Bayesian inference  Ex. Simulated annealing, MCMC-based particle filter 4. Learning  MLE learning, unsupervised learning Usage 3

Why MCMC is called MCMC 4

5

3. Markov Chain Monte Carlo  Construct a Markov Chain representing a target distribution.  Why MCMC is called MCMC 6 …

MCMC Methods 7 MetropolisMetropolis-Hastings

MCMC Methods 8

9

3. Reversible Jump(or trans-dimensional) MCMC  When the dimension of the state is changed,  Additionally consider a move type. MCMC Methods 10

1. Markov Chain property  Stationary distribution (or detailed balance) Irreducible (all pi > 0) Aperiodic Appendix 11

2. MH sampling as a Markov Chain  The transition probability kernel in the MH algorithm Thus, if the MH kernel satisfies then the stationary distribution from this kernel corresponds to draws from the target distribution. Appendix 12

2. MH sampling as a Markov Chain Appendix 13

    B. Walsh, “Markov Chain Monte Carlo and Gibbs Sampling”, Lecture Notes, MIT, 2004 Reference 14

15 Thank you!