IEPAD: Information Extraction based on Pattern Discovery Chia-Hui Chang National Central University, Taiwan

Slides:



Advertisements
Similar presentations
Combinatorial Pattern Matching CS 466 Saurabh Sinha.
Advertisements

Improved Algorithms for Inferring the Minimum Mosaic of a Set of Recombinants Yufeng Wu and Dan Gusfield UC Davis CPM 2007.
Fast Algorithms For Hierarchical Range Histogram Constructions
ANNIC ANNotations In Context GATE Training Course 27 – 28 April 2006 Niraj Aswani.
Data Mining Association Analysis: Basic Concepts and Algorithms
15-853Page : Algorithms in the Real World Suffix Trees.
296.3: Algorithms in the Real World
Suffix Trees Suffix trees Linearized suffix trees Virtual suffix trees Suffix arrays Enhanced suffix arrays Suffix cactus, suffix vectors, …
Web Document Clustering: A Feasibility Demonstration Hui Han CSE dept. PSU 10/15/01.
3 -1 Chapter 3 String Matching String Matching Problem Given a text string T of length n and a pattern string P of length m, the exact string matching.
Tries Standard Tries Compressed Tries Suffix Tries.
Combinatorial Pattern Matching CS 466 Saurabh Sinha.
Refining Edits and Alignments Υλικό βασισμένο στο κεφάλαιο 12 του βιβλίου: Dan Gusfield, Algorithms on Strings, Trees and Sequences, Cambridge University.
Suffix Trees String … any sequence of characters. Substring of string S … string composed of characters i through j, i ate is.
Association Analysis. Association Rule Mining: Definition Given a set of records each of which contain some number of items from a given collection; –Produce.
Jan. 2013Dr. Yangjun Chen ACS Outline Signature Files - Signature for attribute values - Signature for records - Searching a signature file Signature.
GNANA SUNDAR RAJENDIRAN JOYESH MISHRA RISHI MISHRA FALL 2008 BIOINFORMATICS Clustering Method for Repeat Analysis in DNA sequences.
Annotation Free Information Extraction Chia-Hui Chang Department of Computer Science & Information Engineering National Central University
Goodrich, Tamassia String Processing1 Pattern Matching.
Xyleme A Dynamic Warehouse for XML Data of the Web.
Web Information Retrieval and Extraction Chia-Hui Chang, Associate Professor National Central University, Taiwan
Aki Hecht Seminar in Databases (236826) January 2009
ODE: Ontology-assisted Data Extraction WEIFENG SU et al. Presented by: Meher Talat Shaikh.
Visual Web Information Extraction With Lixto Robert Baumgartner Sergio Flesca Georg Gottlob.
Efficient Web Browsing on Handheld Devices Using Page and Form Summarization Orkut Buyukkokten, Oliver Kaljuvee, Hector Garcia-Molina, Andreas Paepcke.
LinkSelector: A Web Mining Approach to Hyperlink Selection for Web Portals Xiao Fang University of Arizona 10/18/2002.
Dynamic Text and Static Pattern Matching Amihood Amir Gad M. Landau Moshe Lewenstein Dina Sokol Bar-Ilan University.
Sequence Alignment Variations Computing alignments using only O(m) space rather than O(mn) space. Computing alignments with bounded difference Exclusion.
Web Information Retrieval and Extraction Chia-Hui Chang, Associate Professor National Central University, Taiwan Sep. 16, 2005.
Image Categorization by Learning and Reasoning with Regions Yixin Chen, University of New Orleans James Z. Wang, The Pennsylvania State University Published.
1 Convolution and Its Applications to Sequence Analysis Student: Bo-Hung Wu Advisor: Professor Herng-Yow Chen & R. C. T. Lee Department of Computer Science.
Extracting Structured Data from Web Page Arvind Arasu, Hector Garcia-Molina ACM SIGMOD 2003.
Annotation Free Information Extraction
Aho-Corasick Algorithm Generalizes KMP to handle sets of strings New ideas –keyword trees –failure functions/links –output links.
Pattern Matching1. 2 Outline Strings Pattern matching algorithms Brute-force algorithm Boyer-Moore algorithm Knuth-Morris-Pratt algorithm.
Chapter 2: Algorithm Discovery and Design
1 Exact Set Matching Charles Yan Exact Set Matching Goal: To find all occurrences in text T of any pattern in a set of patterns P={p 1,p 2,…,p.
Annotating Search Results from Web Databases. Abstract An increasing number of databases have become web accessible through HTML form-based search interfaces.
Chia-Hui Chang, Shao-Chen Lui Dept. of Computer Science and Information Engineering National Central University IEPAD: Information Extraction Based on.
An Integrated Approach to Extracting Ontological Structures from Folksonomies Huairen Lin, Joseph Davis, Ying Zhou ESWC 2009 Hyewon Lim October 9 th, 2009.
Automatically Extracting Data Records from Web Pages Presenter: Dheerendranath Mundluru
CSCE350 Algorithms and Data Structure Lecture 17 Jianjun Hu Department of Computer Science and Engineering University of South Carolina
Introduction n – length of text, m – length of search pattern string Generally suffix tree construction takes O(n) time, O(n) space and searching takes.
CSC401 – Analysis of Algorithms Chapter 9 Text Processing
Faster Algorithm for String Matching with k Mismatches (II) Amihood Amir, Moshe Lewenstin, Ely Porat Journal of Algorithms, Vol. 50, 2004, pp
Expert Systems with Applications 34 (2008) 459–468 Multi-level fuzzy mining with multiple minimum supports Yeong-Chyi Lee, Tzung-Pei Hong, Tien-Chin Wang.
Chapter 9: Structured Data Extraction Supervised and unsupervised wrapper generation.
Working with Forms and Regular Expressions Validating a Web Form with JavaScript.
Information Extraction for Semi-structured Documents: From Supervised learning to Unsupervised learning Chia-Hui Chang Dept. of Computer Science and Information.
1 CS 430: Information Discovery Lecture 4 Files Structures for Inverted Files.
Algorithmic Detection of Semantic Similarity WWW 2005.
LOGO 1 Corroborate and Learn Facts from the Web Advisor : Dr. Koh Jia-Ling Speaker : Tu Yi-Lang Date : Shubin Zhao, Jonathan Betz (KDD '07 )
LOGO 1 Mining Templates from Search Result Records of Search Engines Advisor : Dr. Koh Jia-Ling Speaker : Tu Yi-Lang Date : Hongkun Zhao, Weiyi.
A Repetition Based Measure for Verification of Text Collections and for Text Categorization Dmitry V.Khmelev Department of Mathematics, University of Toronto.
Huffman’s Algorithm 11/02/ Weighted 2-tree A weighted 2-tree T is an extended binary tree with n external nodes and each of the external nodes is.
Multilingual Information Retrieval using GHSOM Hsin-Chang Yang Associate Professor Department of Information Management National University of Kaohsiung.
INVITATION TO Computer Science 1 11 Chapter 2 The Algorithmic Foundations of Computer Science.
An Energy-Efficient Approach for Real-Time Tracking of Moving Objects in Multi-Level Sensor Networks Vincent S. Tseng, Eric H. C. Lu, & Kawuu W. Lin Institute.
A Multilingual Hierarchy Mapping Method Based on GHSOM Hsin-Chang Yang Associate Professor Department of Information Management National University of.
Chapter 9: Structured Data Extraction Supervised and unsupervised wrapper generation.
Instance Discovery and Schema Matching With Applications to Biological Deep Web Data Integration Tantan Liu, Fan Wang, Gagan Agrawal {liut, wangfa,
Chapter 11. Chapter Summary  Introduction to trees (11.1)  Application of trees (11.2)  Tree traversal (11.3)  Spanning trees (11.4)
PAIR project progress report Yi-Ting Chou Shui-Lung Chuang Xuanhui Wang.
Advanced Data Structures Lecture 8 Mingmin Xie. Agenda Overview Trie Suffix Tree Suffix Array, LCP Construction Applications.
Tries 4/16/2018 8:59 AM Presentation for use with the textbook Data Structures and Algorithms in Java, 6th edition, by M. T. Goodrich, R. Tamassia, and.
HUFFMAN CODES.
Web Data Extraction Based on Partial Tree Alignment
Automatic Wrapper Induction: “Look Mom, no hands!”
Algorithm Discovery and Design
Chap 3 String Matching 3 -.
Presentation transcript:

IEPAD: Information Extraction based on Pattern Discovery Chia-Hui Chang National Central University, Taiwan

2001/5/42 Outline Introduction Problem definition Related Work System architecture Extraction rule generation Experiments Summary and future work

2001/5/43 Introduction Web information integration multi-search engines, e.g. Metacrawler shopping agents etc. Common tasks Data collection Information extraction

2001/5/44 Information Extraction Information Extraction (IE) Input: Html pages Output: A set of records

2001/5/45 Related Work Extractor Generation Hand-coded wrappers by observation Machine learning based approach WIEN (Kushmeric), 1997 SoftMealy (Hsu), 1998 STALKER (Muslea), 1999 Fully automatic approach Embley et al, 1999 Chang et al, 2000

2001/5/46 System Architecture Rule Generator Extractor Extraction Results Html Page Patterns Pattern Viewer Extraction Rule Users Html Pages

2001/5/47 Pattern Discovery based IE Motivation Display of multiple records often forms a repeated pattern The occurrences of the pattern are spaced regularly and adjacently Now the problem becomes... Find regular and adjacent repeats in a string

2001/5/48 The Rule Generator Translator PAT tree construction Pattern validator Rule Composer HTML Page Token Translator PAT Tree Constructor Validator Rule Composer PAT trees and Maximal Repeats Advenced Patterns Extraction Rules A Token String

2001/5/49 1. Web Page Translation Encoding of HTML source Rule 1: Each tag is encoded as a token Rule 2: Any text between two tags are translated to a special token called TEXT (denoted by a underscore) HTML Example: Congo 242 Egypt 20 Encoded token string T( )T(_)T( )T( )T(_)T( )T( )

2001/5/410 Various Encoding Schemes

2001/5/411 Example of BL Encoding Encoding scheme=Block-Level Tags 1 ’. Only block-level tags are considered, each tag is encoded as a token 2. Any text between two tags are translated to a special token called TEXT (denoted by a underscore) 1. MGI Mouse Genome … The Mouse Genome Informatics (MGI).. URL: … … … Facts about: … _ _ _ _

2001/5/ PAT Tree Construction PAT tree: binary suffix tree A Patricia tree constructed over all possible suffix strings of a text Example T( ) 000 T( )001 T( )010 T( )011 T( )100 T(_) T( )T(_)T( )T( )T(_)T( )T( )

2001/5/413 The Constructed PAT Tree

2001/5/414 Definition of Maximal Repeats Let  occurs in S in position p 1, p 2, p 3, …, p k  is left maximal if there exists at least one (i, j) pair such that S[p i -1]S[p j -1]  is right maximal if there exists at least one (i, j) pair such that S[p i +||]S[p j +||]  is a maximal repeat if it it both left maximal and right maximal

2001/5/415 Finding Maximal Repeats Definition: Let ’ s call character S[p i -1] the left character of suffix p i A node is left diverse if at least two leaves in the ’ s subtree have different left characters Lemma: The path labels of an internal node in a PAT tree is a maximal repeat if and only if is left diverse

2001/5/ Pattern Validator Suppose a maximal repeat  are ordered by its position such that suffix p 1 < p 2 < p 3 … < p k, where p i denotes the position of each suffix in the encoded token sequence. Characteristics of a Pattern Regularity: Variance coefficient Adjacency: Density

2001/5/417 Pattern Validator (Cont.) Basic Screening For each maximal repeat , compute V() and D() a) check if the pattern ’ s variance: V() < 0.5 b) check if the pattern ’ s density: 0.25 < D() < 1.5 V(  )< <D(  )<1.5 Yes No Discard Yes Pattern  No Discard Pattern 

2001/5/ Rule Composer Occurrence partition Flexible variance threshold control Multiple string alignment Increase density of a pattern ’’ V(  )< <D(  )<1.5 Yes No Discard Yes  occurrences No  Occurrence Partition Multiple String Alignment D(  )<1 Yes No V(  )<0.1 No Discard

2001/5/419 Occurrence Partition Problem Some patterns are divided into several blocks Ex: Lycos, Excite with large regularityLycosExcite Solution Clustering of the occurrences of such a pattern Clustering V(  )<0.1 No Discard  Check density Yes

2001/5/420 Multiple String Alignment Problem Patterns with density less than 1 can extract only part of the information Solution Align k-1 substrings among the k occurrences A natural generalization of alignment for two strings which can be solved in O(n*m) by dynamic programming where n and m are string lengths.

2001/5/421 Multiple String Alignment (Cont.) Suppose “adc” is the discovered pattern for token string “adcwbdadcxbadcxbdadcb” If we have the following multiple alignment for strings ``adcwbd'', ``adcxb'' and ``adcxbd'': a d c w b d a d c x b - a d c x b d The extraction pattern can be generalized as “adc[w|x]b[d|-]”

2001/5/422 Pattern Viewer Java-application based GUI Web based GUI

2001/5/423 The Extractor Matching the pattern against the encoding token string Knuth-Morris-Pratt ’ s algorithm Boyer-Moore ’ s algorithm Alternatives in a rule matching the longest pattern What are extracted? The whole record

2001/5/424 Experiment Setup Fourteen sources: search engines Performance measures Number of patterns Retrieval rate and Accuracy rate Parameters Encoding scheme Thresholds control

2001/5/425 # of Patterns Discovered Using BlockLevel Encoding Average 117 maximal repeats in our test Web pages

2001/5/426 Translation Average page length is 22.7KB

2001/5/427 Accuracy and Retrieval Rate

2001/5/428 Accuracy and Retrieval Rate

2001/5/429 Summary IEPAD: Information Extraction based on Pattern Discovery Rule generator The extractor Pattern viewer Performance 97% retrieval rate and 94% accuracy rate

2001/5/430 Problems Guarantee high retrieval rate instead of accuracy rate Generalized rule can extract more than the desired data Only applicable when there are several records in a Web page, currently

2001/5/431 Final Acknowledgement We would like to thank Lee-Feng Chien, Ming-Jer Lee and Jung-Liang Chen for providing their PAT tree code for us. Reference Chang, C.H. and Lui, S.C. IEPAD: Information Extraction based on Pattern Discovery, WWW10, May. 2001, Hong Kong.

2001/5/432 Future Work Interface for choosing a pattern Multi-level extraction From record boundary extraction to attribute value extraction Extractors in Java and C++

2001/5/433 Rule Format level 1 encoding scheme: rule level 2 encoding scheme: rule for block 1 level 2 encoding scheme: rule for block 2... level 2 encoding scheme, rule for block k level 1 block 1, level 2 block no for attribute 1 level 1 block 1, level 2 block no for attribute 2... level 1 block 1, level 2 block no for attribute t K 個 block t 個 attribute

2001/5/434 Example(cont.) Line 0: Blocklevel.h, String String String String String Line 1: Alltag.h, rule for block 1 Line 2: Alltag.h, rule for block 2... Line k: Alltag.h, rule for block k Line k+1: level 1 block no, level 2 block no for attribute 1 Line k+2: level 1 block no, level 2 block no for attribute 2... Line k+t: level 1 block no, level 2 block no for attribute t Demo ex: 3, 2 ex: 5, all ex: 5, 1 3

Congo Example

2001/5/436 Performance Evaluation Definition: A pattern is said to enumerate a record if the overlapping percentage between the record and the pattern is greater than  Three Measures Retrieval Rate Accuracy Rate Matching Percentage

2001/5/437 Illustration Let G i,j denotes the ordered occurrences p i, p i+1,..., p j S=, i=1; For j=1 to k-1 do If R(G i,j+1 ) >  then If R(G i,j ) <  m then S= S  { G i,j } ; endif i= j+1; endif endf