Goal: To persuade a bacterium to produce a variety of small peptides and secrete them into the medium.

Slides:



Advertisements
Similar presentations
Another engineering principle: Characterization..
Advertisements

Hamilton Path Problem with Golden Gate Shuffle Catherine Doyle, James Harden, Julia Fearrington, Duke DeLoache, Lilly Wilson.
You start with a biologically relevant protein from a pathogen (Bacterium, virus, parasite…)
Microbial Therapy (Steph, Alex, Sammy) Pathway Engineering - make product body needs (possibly sense deficiency) - Synthetic Symbiosis (E. coli natural.
CRISPR System Caroline Vrana Davidson College Synthetic Biology Summer 2012.
Pages 2 to 7: Playing cards for Memory and Total recall Pages 2 to 4: keyword-cards Pages 5 to 7: keyword-cards with corresponding explanation-cards Page.
Chapter 4: recombinant DNA
Genetic Engineering First, the nucleus of human cells are burst Human cell Nucleus.
Aulani "GE" Presentation 1 Aulanni’am Biochemistry Laboratory Chemistry Department Brawijaya University Genetic Engineering.
Synthetic Biology Lecture 2: Fundamentals of Synthetic Biology.
Figure 4.2 from Royal Academy of Engineering report (June, 2009) “What comes to mind when I say ‘synthetic biology’?”
General Microbiology (Micr300) Lecture 11 Biotechnology (Text Chapters: ; )
Synthetic Biology and iGEM Cambridge iGEM2007 team 27 July 2007.
Genetic engineering Recombinant DNA technology. Questions: Name 3 things you know about bacteria. What are some characteristics that make bacteria a good.
Plasmid purification lab
Lox Site Random Non-coding DNA (1-2kb) Stop Codons Antibiotic Resist Cre Pops Blocker This device will prevent Pops from a promoter reaching target genes.
Recombinant DNA Technology Site directed mutagenesis Genetics vs. Reverse Genetics Gene expression in bacteria and viruses Gene expression in yeast Genetic.
Genetic transformation of E. coli bacteria
Do Now 3/20 OBJECTIVES: Define plasmid and restriction enzyme. Identify where a restriction enzyme will cut a DNA sequence. Explain how REs and plasmids.
Presentation on genome sequencing. Genome: the complete set of gene of an organism Genome annotation: the process by which the genes, control sequences.
Restriction enzymes (endonucleases)
In vivo gene cloning.
Cloning and rDNA (II) Dr. Abdulaziz Almalik
Bacillus subtilis expression/secretion systems
Application of biotechnology Expression in E. coli Dr Muhammad Imran.
Basic DNA Science BE Bootcamp 2008 Phillips Group / Caltech.
A. Malcolm Campbell Biology and GCAT Laurie J. Heyer Mathematics and GCAT AP Institute June 29, 2011 Introduction to Synthetic Biology Todd T. Eckdahl.
Microbial Biotechnology Philadelphia University
Max Showalter 7. June 2012 Purdue University. Let’s begin at the parts registry homepageparts registry Click On When you get to this webpage, you will.
Lecture 7 Manipulation of foreign gene and secretion of foreign protein.
Anita Nguyen & Harriet Gliddon.  A good characterisation for a part is: “The minimum amount of information someone needs to reuse the part without any.
Copyright © Dean Madden, 2013
Using Synthetic Biology and pClone Red for Authentic Research on Promoter Function: Genetics (analyzing mutant promoters) Todd T. Eckdahl and A. Malcolm.
Bioengineering Turning Genes on and off in Bacteria.
Etch-a-Sketch. RBS cI434 + LVA Ter ptrpL RBS T7 P + NLS Ter Modified pRM Ter pT7 New Simplified First Run Target mRFP High copy plasmid Low copy plasmid.
Playing cards for Memory and Total recall Pages 2 to 4: keyword-cards Pages 5 to 7: keyword-cards with corresponding explanation-cards.
Plasmid Isolation Prepared by Latifa Aljebali Office: Building 5, 3 rd floor, 5T250.
Moving Green Fluorescent Protein
IGEM 2007 Cell Surface Re-engineering SKS. Outline Cell surface re-engineering Preliminary Results Back to the Drawing Board Outlook.
Fusion Protein Want to Coat Bacteria with Proteins of Interest Surface Display: Fusions to Membrane Proteins Strept Binding Peptides Histidine Tag Random.
Genetic Transformation of Bacteria and Gene Regulation.
AIM: Genetic Engineering: changing the DNA of living organisms. 1. Inserting genes into other organisms 2. Selective Breeding 3. Cloning.
Brown iGEM international genetically engineered machines competition August Update 1/55.
PGLO Bacterial Genetics. E. Coli structure.
親愛的吉姆舅舅: 今天吃完晚餐後,奶奶說,在家 裡情況變好以前,您要我搬到城裡跟 您住。奶奶有沒有跟您說,爸爸已經 好久沒有工作,也好久沒有人請媽媽 做衣服了? 我們聽完都哭了,連爸爸也哭了, 但是媽媽說了一個故事讓我們又笑了。 她說:您們小的時候,她曾經被您追 得爬到樹上去,真的嗎? 雖然我個子小,但是我很強壯,
Site-Directed Mutagenesis
Additional Transformation Topics
Production of Recombinant Proteins
Protein engineering and recombinant protein expression
Introduction to Yeast Plasmids
Chapter 10 – Genetic Engineering of Plants: Methodology
Adaptamers Thrombin-binding domain Streptavidin-binding domain
Bacterial Transformation
Genetic Control of Metabolism
Genetic Transformation of Bacteria and Gene Regulation
Endocrine System Chemical Control.
Week 6 Team has split into Dry Lab and Wet Lab Dry Lab: Wet Lab:
Streptavidin on the cell surface
Retroviral vector propagation in helper cells and structure of a prototypical vector. Retroviral vector propagation in helper cells and structure of a.
Biotechnology and Genetic Engineering PBIO 450/550
BioBricks: Registry and Assembly Standarts
Cling-E. coli Let’s get together: Quorum-sensing
Standardized and Scalable DNA Assembly
Genetic Engineering First, the nucleus of human cells are burst
Virginia iGEM Workshop #2 High School Education Series.
Copyright © Dean Madden, 2013
Colicins Yara Reis Erik Sommer Pascal Krämer Andreas Kühne
Genetic Engineering First, the nucleus of human cells are burst
iGEM 2010 General Update and Project Ideas
Volume 6, Issue 6, Pages (November 2013)
Presentation transcript:

Goal: To persuade a bacterium to produce a variety of small peptides and secrete them into the medium

Standard BioBrick plasmid backbone Peptide secretor cassette origin antibiotic resistance X E PS (

Cassette Structure GFP Secretory signal RBS M Peptide His

Standard Promoter e.g. J23100 – Strong, constitutive promoter GFP Secretory signal RBS M Peptide His

Standard RBS e. g. B0034 – star 1 and W GFP Secretory signal RBS M Peptide His

Synthesize Secretory Signal e. g. lipA or sacB – identified from registry Possibly need to synthesize Leave as an exercise for the student! GFP Secretory signal RBS M Peptide His

Some random gene Need a signaller… … and a handle Allow student contributions for alternatives GFP Secretory signal RBS M Peptide His

Need: – 1 cleavage site – 1 target peptide – 1 purification handle The ‘slot’ in the cassette GFP Secretory signal RBS M Peptide His

What goes in the player? The polymer engineer is thinking about, e.g. extracellular matrix proto-molecules and self- assembling elements The biologist is thinking about using this as a recruiting tool… GFP Secretory signal RBS M Peptide His