© Copyright 2008, Mayo Clinic College of Medicine Mayo Clinic Open Health Tools Application for Membership OHT Board Meeting, Birmingham, UK July 1, 2008.

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Presentation transcript:

© Copyright 2008, Mayo Clinic College of Medicine Mayo Clinic Open Health Tools Application for Membership OHT Board Meeting, Birmingham, UK July 1, 2008

© Copyright 2008, Mayo Clinic College of Medicine About Mayo Clinic Mayo Clinic is the first and largest integrated, not- for-profit group practice in the world. Employing more than 3,300 physicians, scientists and researchers and 46,000 allied health staff. Sites in Rochester, Minn., Jacksonville, Fla., and Scottsdale/Phoenix, Ariz. Collectively, the three locations treat more than half a million people each year. Mission: To provide the best care to every patient every day through integrated clinical practice, education, and research.

© Copyright 2008, Mayo Clinic College of Medicine Possible Contributions LexGrid Vocabulary Services Other OBO Content Export Import OWL XML OBO Text Protégé RRF XML Representation LexGrid Vocabulary Model Data Repository Tools And Services Access Programming Interfaces APIs LexBIG … CTS Apps Java Embed Web Services Distributed LexBIG API Application Server File System: Metadata & Indexes Grid Services NCI/NCBO Services LexGrid Model & Storage Applications LexBIG API Publish and query vocabularies via common tools, storage formats, and access/update mechanisms. Initial focus on the 'LexBIG' software project, managed as a common open source code base in support of NCI Enterprise Vocabulary Services (EVS) and the National Center of Biomedical Ontology (NCBO) BioPortal.

© Copyright 2008, Mayo Clinic College of Medicine Possible Contributions LexWIKI Collaborative Authoring Tools Code in support of an open source distributed platform for collaborative terminology authoring based on Semantic MediaWiki technology. Potential submissions will be based on software developed in support of World Health Organization (WHO) authoring of ICD11 and NCI Biomedical Grid Terminology (BiomedGT) content development. Wiki Core Semantic Forms MySQL LexBIG Export/Load Domain Experts Protégé Authoring Change sets Detection Templates LexWIKI Editor LexWiki Tab Semantic Wiki

© Copyright 2008, Mayo Clinic College of Medicine Possible Contributions Natural Language Processing Potential submissions will include open source distribution of natural language parsing algorithms and text annotators. Prior open source efforts in this area have been implemented as plug-ins to IBM's open source Unstructured Information Management Architecture (UIMA) framework.

© Copyright 2008, Mayo Clinic College of Medicine Thank You! Contacts: Thomas Johnson, Biomedical Informatics, Tammy Goemaat, Public Affairs, References: LexBIG - resentations/ _NLM.pdf?rev=1.1;content- type=application%2Foctet-stream;cvsroot=lexbig resentations/ _NLM.pdf?rev=1.1;content- type=application%2Foctet-stream;cvsroot=lexbig LexWIKI Natural Language Processing -