Welcome! Check under your keyboard for wireless access info 2014 CMACS Workshop on Modeling Biological Systems.

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Presentation transcript:

Welcome! Check under your keyboard for wireless access info 2014 CMACS Workshop on Modeling Biological Systems

Nancy Griffeth Professor of Computer Science Lehman College January 6, 2014 Funding for this workshop was provided by the program “Computational Modeling and Analysis of Complex Systems,” an NSF Expedition in Computing (Award Number ).

What are we doing here? Preparation and recruiting for research internships and graduate school Exposure to research projects Interdisciplinary work experience Learn a few things Introductions

Today’s agenda Morning Welcome and Paperwork Introduction 12 noon Lunch Afternoon Modeling Mac OS X and Unix Agenda

Staff Nancy Griffeth: professor of computer science at Lehman College James Faeder: professor of computational and systems biology at the University of Pittsburgh Terri Grosso-Applewhite: PhD student in computer science at the Graduate Center Naralys Batista: Computer science major at Lehman, attended last year’s workshop Introductions

Visiting Lecturers Stephen Redenti, professor of biology at Lehman Bud Mishra, professor of computer science and many other things at NYU

Subject Matter How to model signaling pathways, such as those that control cell proliferation Workshop Information

Subject Matter Mathematical modeling techniques and tools Issues with and properties of mathematical models Deterministic versus stochastic Bistability

Who are you? (By college) Introductions

Who are you? (By major) Introductions

Who are you? (Type of major)

Participants Time to introduce yourselves… What’s your college? Your major? Exercise: Meet five of the other attendees – find out why they were interested in coming and what they expect to get out of the workshop. Introductions

Teaming: your primary interest Biologist: understanding biological phenomena Computational: using mathematical and/or computational techniques to understand biology Chemist/physicist: using molecular behaviors to understand biological processes Logistics and paperwork

Logistics Crucial information: Cafeteria Coffee and snacks Bathrooms WiFi Logistics and paperwork

Maps Campus Map Carman Hall is at the southwest end of the campus Logistics and paperwork

Tunnels Logistics and paperwork

Paperwork For stipend: Form 701 Teaming questionnaire (on-line) Logistics and paperwork

Questions or Discussion?

Workshop Outline Week 1: Biological and computational basics Week 2: Modeling and computational tools Week 3: Project

Today’s agenda Morning Welcome and Paperwork Introduction 12 noon Lunch Afternoon Modeling Mac OS X and Unix Agenda