DNA microarray example: –As a scientist, you are interested in the differences in expression patterns between normal human cells and cancer cells –A DNA.

Slides:



Advertisements
Similar presentations
A Little More Advanced Biotechnology Tools
Advertisements

Microarray Technique, Analysis, and Applications in Dermatology Jennifer Villaseñor-Park 1 and Alex G Ortega-Loayza 2 1 Department of Dermatology, University.
Polymerase Chain Reaction (PCR). PCR produces billions of copies of a specific piece of DNA from trace amounts of starting material. (i.e. blood, skin.
Recombinant DNA technology
20,000 GENES IN HUMAN GENOME; WHAT WOULD HAPPEN IF ALL THESE GENES WERE EXPRESSED IN EVERY CELL IN YOUR BODY? WHAT WOULD HAPPEN IF THEY WERE EXPRESSED.
RNA and PROTEIN SYNTHESIS
Methylation, Acetylation and Epigenetics
RNA-Seq An alternative to microarray. Steps Grow cells or isolate tissue (brain, liver, muscle) Isolate total RNA Isolate mRNA from total RNA (poly.
Introduction to DNA Microarrays Todd Lowe BME 88a March 11, 2003.
DNA Microarray: A Recombinant DNA Method. Basic Steps to Microarray: Obtain cells with genes that are needed for analysis. Isolate the mRNA using extraction.
RNA-Seq An alternative to microarray. Steps Grow cells or isolate tissue (brain, liver, muscle) Isolate total RNA Isolate mRNA from total RNA (poly.
An Introduction to DNA Microarrays Jack Newton University of Alberta
Arrays: Narrower terms include bead arrays, bead based arrays, bioarrays, bioelectronic arrays, cDNA arrays, cell arrays, DNA arrays, gene arrays, gene.
Why microarrays in a bioinformatics class? Design of chips Quantitation of signals Integration of the data Extraction of groups of genes with linked expression.
Genomics I: The Transcriptome RNA Expression Analysis Determining genomewide RNA expression levels.
By Moayed al Suleiman Suleiman al borican Ahmad al Ahmadi
Transcription Transcription is the synthesis of mRNA from a section of DNA. Transcription of a gene starts from a region of DNA known as the promoter.
Chapter 11 Table of Contents Section 1 Control of Gene Expression
Chapter 11 Objectives Section 1 Control of Gene Expression
DNA MICROARRAYS WHAT ARE THEY? BEFORE WE ANSWER THAT FIRST TAKE 1 MIN TO WRITE DOWN WHAT YOU KNOW ABOUT GENE EXPRESSION THEN SHARE YOUR THOUGHTS IN GROUPS.
Understanding CGAP Understanding Cancer and Related Topics
Data Type 1: Microarrays
Chapter 11 Table of Contents Section 1 Control of Gene Expression
Microarray Technology
Introduction to DNA microarrays DTU - May Hanne Jarmer.
The Rise of Genomics AP Biology Fall The Human Genome Project  With the invention of PCR and automated sequencing, scientists argued for the sequencing.
Do Now: On the “Modeling DNA” handout, determine the complimentary DNA sequence and the mRNA sequence by using the sequence given.
8.6 Gene Expression and Regulation TEKS 5C, 6C, 6D, 6E KEY CONCEPT Gene expression is carefully regulated in both prokaryotic and eukaryotic cells.
Microarrays and Gene Expression Analysis. 2 Gene Expression Data Microarray experiments Applications Data analysis Gene Expression Databases.
Genomics I: The Transcriptome
1 Genomics The field of biology based on studying the entire DNA sequence of an organism - its “genome”. Genomics tools don’t replace classical genetics.
Microarrays and Gene Expression Arrays
ROLE OF GENE EXPRESSION:  Activation of a gene that results in a protein  Cells DO NOT need to produce proteins for every code. GENOME:  Complete genetic.
Microarray Technology. Introduction Introduction –Microarrays are extremely powerful ways to analyze gene expression. –Using a microarray, it is possible.
Genetic Testing Amniocentesis Until recently, most genetic testing occurred on fetuses to identify gender and genetic diseases. Amniocentesis is one technique.
Genetic Engineering Genetic engineering is also referred to as recombinant DNA technology – new combinations of genetic material are produced by artificially.
ANALYSIS OF GENE EXPRESSION DATA. Gene expression data is a high-throughput data type (like DNA and protein sequences) that requires bioinformatic pattern.
Microarrays.
Lecture 23 – Functional Genomics I Based on chapter 8 Functional and Comparative Genomics Copyright © 2010 Pearson Education Inc.
Gene Expression Analysis Gabor T. Marth Department of Biology, Boston College BI420 – Introduction to Bioinformatics.
DNA Challenge As a group, quietly discuss each question and agree upon one correct answer. The group with the most correct answers will win.
Genes and Chips. Genes….  The proper and harmonious expression of a large number of genes is a critical component of normal growth and development and.
Protein Synthesis- Transcription DNA-->RNA. Expression of Gene or Protein Synthesis I. Transcription A. Initiation B. Elongation C. Termination D. RNA.
DNA Microarray Overview and Application. Table of Contents Section One : Introduction Section Two : Microarray Technique Section Three : Types of DNA.
Example of a DNA array used to study gene expression (note green, yellow red colors; also note.
DNA Sequencing 8.2. Polymerase Chain Reaction (PCR) a direct method of making many copies of a DNA sequence exponential increase because each cycle doubles.
CFE Higher Biology DNA and the Genome Transcription.
Biotechnology and Bioinformatics: Bioinformatics Essential Idea: Bioinformatics is the use of computers to analyze sequence data in biological research.
Microarray: An Introduction
Fantasy Mutations Reality. Mutations: a permanent and heritable change in the nucleotide sequence of a gene. Are caused by mutagens (x-rays and UV light)
Detecting DNA with DNA probes arrays. DNA sequences can be detected by DNA probes and arrays (= collection of microscopic DNA spots attached to a solid.
Vectors Bacteria, viruses or liposomes into which DNA can be inserted. These can be used to grow genes, harvest the proteins they code for or deliver them.
How to Use This Presentation
Chapter C4 Unraveling DNA
Table of Contents Section 1 Control of Gene Expression
Aim: How can we observe DNA?
Protein Synthesis From genes to proteins.
What are the Advantages?
Lecture 11 By Shumaila Azam
Web site for step-by-step Instructions
DNA Technology.
محاضرة عامة التقنيات الحيوية (هندسة الجينات .. مبادئ وتطبيقات)
CHAPTER 12 DNA Technology and the Human Genome
Gene Chips.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
Reading Gels -once a gel has been run, it is stained with another chemical exposed to UV light to allow the DNA to appear -below is an example of a gel.
DNA and the Genome Key Area 3b Transcription.
Unit 2 Lesson 6: DNA Structure and Function
Alternative RNA Splicing
Presentation transcript:

DNA microarray example: –As a scientist, you are interested in the differences in expression patterns between normal human cells and cancer cells –A DNA microarray can be constructed that has enough space for 40,000 – 60,000 known genes Remember that it is estimated that the human genome only has 30,000+ genes –There are several ways to construct your microarray Deposit known exons onto the chip chemically Photolithography DNA Analysis: DNA Microarrays

An empty glass slide Attach nucleotides and an associated protector group The protector group is photoliable. It is removed when exposed to UV light

DNA microarray example: –As a scientist, you are interested in the differences in expression patterns between normal human cells and cancer cells DNA Analysis: DNA Microarrays Once the microarray is ready, you can collect your normal and cancer cells and extract the gene expression products – mRNA Animation