1 Nano WG Activities for Current Period – NPO Related Establish formal processes incorporating JIRA tracker for Nanoparticle Ontology (NPO) governance.

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Presentation transcript:

1 Nano WG Activities for Current Period – NPO Related Establish formal processes incorporating JIRA tracker for Nanoparticle Ontology (NPO) governance and for expansion requirements based on ISA-TAB-Nano-related requirements and other user feedback. (May 17) Create additional NPO views or diagrams showing how to use the ontology (July 2) Expansion of NPO to support ISA-TAB-Nano, NanoRegistry and other stakeholders (Nov 2) Communicate project status at Workspace teleconferences, as appropriate. (including Aug 22 and Nov 14) Submit a final report to the ICR Workspace which includes: current activities, statements of scientific purpose, demonstrable need, success metrics and how they were achieved, potential future activities and priorities. (Nov 2)

2 Nano WG Activities for Current Period – ISA-TAB-Nano Related ISA-TAB-Nano mappings to NPO and other ontologies and vocabularies to promote use of standards (July 2) Establish a formal process incorporating JIRA tracker for governance of and to capture requirements from ISA-TAB-Nano users including the responses to the ASTM ballot and user feedback in anticipation of updating the specification (May 17) Continue working with curation and LS DAM teams to enter ISA-TAB-Nano terms into the NCIthesaurus and register it in the caDSR. (July 2) Collaborate with external organizations and communities in order to promote use of ISA-TAB-Nano and NPO, to leverage existing standards, maximize synergies and reduce redundancy of efforts. Document interactions, participation and continuing interest. Consistent participation of these external communities is the measurable outcome. (Nov 2) Communicate project status at Workspace teleconferences, as appropriate. (including Aug 22 and Nov 14) Submit a final report to the ICR Workspace which includes: current activities, statements of scientific purpose, demonstrable need, success metrics and how they were achieved, potential future activities and priorities. (Nov 2) 2

3 ISA-TAB-Nano Action Items Address ISA-TAB-Nano feedback Done. Set up a meeting to review with ISA-TAB, Sharon is waiting for response from Susanna Sansone. Owner: Sharon Gaheen. Reballot ISA-TAB-Nano in ASTM Need to submit the original format. Owner: Nathan Baker. Resubmit ISA-TAB-Nano manuscript Sharon has made necessary changes. Waiting for ISA-TAB feedback. Owner: Nathan Baker. Register ISA-TAB-Nano in caDSR In progress, will be completed by early April. Tommie Curtis is scheduled to give an update on April 10. Owner: Mervi Wiki use ISA-TAB-Nano organized collection of examples on wiki. Owner: Stacey Harper and Tod Stokes. 3

4 ISA-TAB-Nano Action Items User Guide ISA-TAB-Nano user guide. Basic descriptions of elements, glossary. Dennis will update. Owner: Dennis Thomas and Liz Hahn-Dantona ISA-TAB-Nano tutorial Owner: Liz Hahn-Dantona and Sharon Gaheen. ISA-TAB –Nano briefing For Rick Canady and Fatih Unckun, perhaps Krishna Rajan. KP also suggested Bill Zamboni. Owner: Mervi Heiskanen and Stacey Harper ISA-TAB-Nano as a case study on the ISA-TAB sourceforge site. Need to link to tutorial when it has been completed. Owner: Sharon Gaheen. Review the NANO-XML file and map to ISA-XML for consistency Create Nano-XML, Owner; Sharon Gaheen Views into NPO NCBO views of NPO for easy access to ISA-TAB-Nano terms. Mervi to schedule a BioPortal presentation with Trish Whetzel. Owner: Trish Whetzel, Nathan Baker, Gilberto Fragoso. 4

5 ISA-TAB-Nano Action Items ISA-TAB-Nano list of most relevant terms for NPO On hold, pending on upcoming changes to BioPortal. Owner: Fred Klaessig, Dennis Thomas, Marty Fritts. Collaborate with an LS DAM OWL representation effort for NPO reuse and extension. Mervi contacted Juli, not a high priority item. Owner: Mervi Heiskanen What are the next steps with Krishan Rajan? Completed. Owner: Nathan Baker Metaontology into this call. Expository to review documents and then to look at overlap. Ongoing. Owner: Nathan Baker and Mervi Yoram Cohen or Robert Rallo to provide CEIN update. Presentation scheduled for April 17. Owner: Mervi Heiskanen Sri Nadaduar Have an action to follow up. Owner: Stacey Harper Invite Vladimir Murashov to nano Fred will contact, Mervi will schedule. Owner: Mervi and Fred. 5