Yeast - why it simply has a lot to say about human disease.

Slides:



Advertisements
Similar presentations
Test-tube or keyboard? Computation in the life sciences.
Advertisements

Molecular Systems Biology 3; Article number 140; doi: /msb
Chromosome Disorders. Classification of genetic disorders  Single-gene disorders (2%)  Chromosome disorders (
Combined analysis of ChIP- chip data and sequence data Harbison et al. CS 466 Saurabh Sinha.
Global Mapping of the Yeast Genetic Interaction Network Tong et. al, Science, Feb 2004 Presented by Bowen Cui.
1.Which is the most unlikely involved in the intron- splicing of pre-mRNA ? [a. U1 RNP; b. 5' cap structure; c. polyadenylation signal; d. secondary structure.
Systems Biology Biological Sequence Analysis
Regulatory networks 10/29/07. Definition of a module Module here has broader meanings than before. A functional module is a discrete entity whose function.
27803::Systems Biology1CBS, Department of Systems Biology Schedule for the Afternoon 13:00 – 13:30ChIP-chip lecture 13:30 – 14:30Exercise 14:30 – 14:45Break.
Computational Molecular Biology (Spring’03) Chitta Baral Professor of Computer Science & Engg.
Detecting Orthologs Using Molecular Phenotypes a case study: human and mouse Alice S Weston.
Schedule for the Afternoon 13:00 – 13:30ChIP-chip lecture 13:30 – 14:30Exercise 14:30 – 14:45Break 14:45 – 15:15Regulatory pathways lecture 15:15 – 15:45Exercise.
BIOS 307: Biochemical Metabolism Textbook: Lehninger Principles of Biochemistry;
Systems Biology Biological Sequence Analysis
BACKGROUND E. coli is a free living, gram negative bacterium which colonizes the lower gut of animals. Since it is a model organism, a lot of experimental.
27803::Systems Biology1CBS, Department of Systems Biology Schedule for the Afternoon 13:00 – 13:30ChIP-chip lecture 13:30 – 14:30Exercise 14:30 – 14:45Break.
The Hardwiring of development: organization and function of genomic regulatory systems Maria I. Arnone and Eric H. Davidson.
Joint analysis of genetic and physical interactions in S. cerevisiae Igor Ulitsky Ron Shamir lab School of Computer Science Tel Aviv University.
Introduction to molecular networks Sushmita Roy BMI/CS 576 Nov 6 th, 2014.
Genetics: From Genes to Genomes
Reconstruction of Gene Regulatory Networks from RNA-Seq Data Jianlin Jack Cheng Computer Science Department University of Missouri, Columbia ACM-BCB, 2014.
Comparative Expression Moran Yassour +=. Goal Build a multi-species gene-coexpression network Find functions of unknown genes Discover how the genes.
MCB 317 Genetics and Genomics MCB 317 Topic 10, part 3 A Story of Transcription.
Proteomics Understanding Proteins in the Postgenomic Era.
DEMO CSE fall. What is GeneMANIA GeneMANIA finds other genes that are related to a set of input genes, using a very large set of functional.
Bioinformatics Jan Taylor. A bit about me Biochemistry and Molecular Biology Computer Science, Computational Biology Multivariate statistics Machine learning.
Malignant Melanoma and CDKN2A
BIOS 307: Biochemical Metabolism Textbook: Lehninger Principles of Biochemistry;
July 2015 CSHL Data analysis: GO tools and YeastMine, use-case examples.
Gene Regulatory Network Inference. Progress in Disease Treatment  Personalized medicine is becoming more prevalent for several kinds of cancer treatment.
MMAP: mouse Metabolomics Analysis Platform Preeti Bais 09/09/2014.
Network & Systems Modeling 29 June 2009 NCSU GO Workshop.
Biological Networks. Can a biologist fix a radio? Lazebnik, Cancer Cell, 2002.
Modeling of complex systems: what is relevant? Arno Knobbe, Marvin Meeng, Joost Kok Leiden Institute of Advanced Computer Science (LIACS)
1 Having genome data allows collection of other ‘omic’ datasets Systems biology takes a different perspective on the entire dataset, often from a Network.
Ontology based analyses methods ++ develop a grammar for making productions using mf, bp, cl: –derive a higher level grammar for next level of productions.
Pathway Database Pathway Comparison Expression Viewer Discovery. Pankaj Jaiswal Oregon State University 1.
Bioinformatics MEDC601 Lecture by Brad Windle Ph# Office: Massey Cancer Center, Goodwin Labs Room 319 Web site for lecture:
Biological Networks & Systems Anne R. Haake Rhys Price Jones.
Decoding the Network Footprint of Diseases With increasing availability of data, there is significant activity directed towards correlating genomic, proteomic,
EB3233 Bioinformatics Introduction to Bioinformatics.
Beta Adrenergic Signaling in Heart Roles of local signaling complexes.
William S. Klug Michael R. Cummings Charlotte A. Spencer Concepts of Genetics Eighth Edition Chapter 21 Dissection of Gene Function: Mutational Analysis.
GO based data analysis Iowa State Workshop 11 June 2009.
The type of target influence the type of drug Main drugs’ categories –Small molecules –Biologicals (e.g. antibodies, hormones, etc) The drug discovery.
Mendelian Genetics AP Biology Unit 3 Mendel’s Experiments Crossbred Pea Plants P, F1, F2 generations.
PLANT BIOTECHNOLOGY & GENETIC ENGINEERING (3 CREDIT HOURS) LECTURE 13 ANALYSIS OF THE TRANSCRIPTOME.
Fanconi Anemia Anthony Winchell. What is Fanconi Anemia?
TSC1/Hamartin and Facial Angiofibromas Biology 169 Ann Hau.
(1) Genotype-Tissue Expression (GTEx) Largest systematic study of genetic regulation in multiple tissues to date 53 tissues, 500+ donors, 9K samples, 180M.
1 How do regulatory networks evolve? Module = group of genes co-regulated by the same regulatory system * Evolution of individual gene targets Gain or.
Change in Pufs and their RNA InteractionsAnalogous change in transcription factors and their gene regulation Puf binding specificity tends to be conserved.
12.4 Mutations Changes in the genetic material Mistake in copying, carcinogens Single gene = gene mutation Entire chromosome = chromosomal mutation.
1. SELECTION OF THE KEY GENE SET 2. BIOLOGICAL NETWORK SELECTION
From Prescription to Transcription: Genome Sequence as Drug Target
Schedule for the Afternoon
The Impact of Network Medicine in Gastroenterology and Hepatology
Figure 3 Statistical approaches for the analysis of metabolomic data
Relationship between Genotype and Phenotype
Yanchang Wang Biomedical Sciences
Effect of altered 3′UTR on miRNA-mediated gene regulation.
Genetic variation in DREs could be a causative factor in dysregulation of distal target gene expression. Genetic variation in DREs could be a causative.
Nitzan Koppel, Emily P. Balskus  Cell Chemical Biology 
Meiotic Recombination: Genetics’ Good Old Scalpel
The MultiOmics Explainer
Strategic command of living processes
Mutations Chapter 8.7
Integrative omic approaches for the study of host–pathogen interactions Integrative omic approaches for the study of host–pathogen interactions (A) Proteomic.
BRC Science Highlight Yeast evolved for enhanced xylose utilization reveal interactions between cell signaling and Fe-S cluster biogenesis Objective Obtain.
Interactome Networks and Human Disease
Presentation transcript:

Yeast - why it simply has a lot to say about human disease

Genetic mutations identified in human disorders

A richness of data allows yeast to tell a multi-dimensional story Zhu, et al. (2012), Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation. PLoS Biology metabolites genes genes w/cis-eQTLs Leu3p binding sites

Human connections into SGD Homology & Disease X Functional Complementation Phenotypes & Orthology Literature Drug Interactions

Searchable Connections gene name

Searchable Connections yeast gene

Searchable Connections human gene

disorder Searchable Connections

A real and present connection

NGLY1 SGD’s Advanced Search

A real and present connection yeast PNG1 phenotypes function pathways literature protein properties genetic interactions NGLY1 SGD’s Advanced Search

Connection start points Human genes Yeast homologs Function known, human homologs Yeast genes 4500 genes 1340 diseases 2750 genes

SGD: Powering Connections