MainLabMeeting_PingZheng_121009 1. Ran the fgenesh on the large contigs from the matina_1_6_RNA dataset and performed BLAST the Putative genes against.

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Presentation transcript:

MainLabMeeting_PingZheng_ Ran the fgenesh on the large contigs from the matina_1_6_RNA dataset and performed BLAST the Putative genes against TAIR, trembl, swissprot. SSRanalysis. 2. Updated COS analysis information as requested. 3. Uploaded above results to the cacao db and updated the pages. 4. Provided the summary information for the blast results of the input sequence file. Cacao Genome Database matina_1_6_RNA dataset

MainLabMeeting_PingZheng_ Cacao Genome Database cacao_ests.trim.fasta 1.Parsed the GenBank features and added some GenBank features to the sequence. 2. Renamed assembled conting and qual files

MainLabMeeting_PingZheng_ Update Cacao Genome Database pages related to data files, make them more functional. 2.Working on coming cacao_ests.trim.fasta 3. Homology analysis for putative genes of the usda assemble run 1_15 4. Finishing MIPS annotation for the apple upregulated and downregulated genes cultivar (another cultivar). Further work

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