Boyer Moore Algorithm String Matching Problem Algorithm 3 cases Searching Timing.

Slides:



Advertisements
Similar presentations
1 Average Case Analysis of an Exact String Matching Algorithm Advisor: Professor R. C. T. Lee Speaker: S. C. Chen.
Advertisements

Chapter 7 Space and Time Tradeoffs Copyright © 2007 Pearson Addison-Wesley. All rights reserved.
北海道大学 Hokkaido University 1 Lecture on Information knowledge network2010/12/23 Lecture on Information Knowledge Network "Information retrieval and pattern.
© 2004 Goodrich, Tamassia Pattern Matching1. © 2004 Goodrich, Tamassia Pattern Matching2 Strings A string is a sequence of characters Examples of strings:
Space-for-Time Tradeoffs
Graph and String Matching String Matching Problem Given a text string T of length n and a pattern string P of length m, the exact string matching.
© 2004 Goodrich, Tamassia Tries1. © 2004 Goodrich, Tamassia Tries2 Preprocessing Strings Preprocessing the pattern speeds up pattern matching queries.
Exact String Search Lecture 7: September 22, 2005 Algorithms in Biosequence Analysis Nathan Edwards - Fall, 2005.
Tries Search for ‘bell’ O(n) by KMP algorithm O(dm) in a trie Tries
Lecture 27. String Matching Algorithms 1. Floyd algorithm help to find the shortest path between every pair of vertices of a graph. Floyd graph may contain.
Suffix Trees String … any sequence of characters. Substring of string S … string composed of characters i through j, i ate is.
1 Fastest Approach to Exact Pattern Matching Date:102/3/13 Publisher:Information and Emerging Technologies (ICIET), 2010 Information and Emerging Technologies.
Pattern Matching1. 2 Outline and Reading Strings (§9.1.1) Pattern matching algorithms Brute-force algorithm (§9.1.2) Boyer-Moore algorithm (§9.1.3) Knuth-Morris-Pratt.
Advisor: Prof. R. C. T. Lee Reporter: Z. H. Pan
Boyer-Moore string search algorithm Book by Dan Gusfield: Algorithms on Strings, Trees and Sequences (1997) Original: Robert S. Boyer, J Strother Moore.
Boyer-Moore Algorithm 3 main ideas –right to left scan –bad character rule –good suffix rule.
A Fast String Searching Algorithm Robert S. Boyer, and J Strother Moore. Communication of the ACM, vol.20 no.10, Oct
Smith Algorithm Experiments with a very fast substring search algorithm, SMITH P.D., Software - Practice & Experience 21(10), 1991, pp Adviser:
Quick Search Algorithm A very fast substring search algorithm, SUNDAY D.M., Communications of the ACM. 33(8),1990, pp Adviser: R. C. T. Lee Speaker:
The Zhu-Takaoka Algorithm
Backward Nondeterministic DAWG Matching Algorithm
Raita Algorithm T. RAITA Advisor: Prof. R. C. T. Lee
Aho-Corasick Algorithm Generalizes KMP to handle sets of strings New ideas –keyword trees –failure functions/links –output links.
1 Boyer-Moore Charles Yan Exact Matching Boyer-Moore ( worst-case: linear time, Typical: sublinear time ) Aho-Corasik ( A set of pattern )
Pattern Matching1. 2 Outline Strings Pattern matching algorithms Brute-force algorithm Boyer-Moore algorithm Knuth-Morris-Pratt algorithm.
1 Exact Matching Charles Yan Na ï ve Method Input: P: pattern; T: Text Output: Occurrences of P in T Algorithm Naive Align P with the left end.
A Fast Algorithm for Multi-Pattern Searching Sun Wu, Udi Manber May 1994.
String Matching. Problem is to find if a pattern P[1..m] occurs within text T[1..n] Simple solution: Naïve String Matching –Match each position in the.
KMP String Matching Prepared By: Carlens Faustin.
MA/CSSE 473 Day 24 Student questions Quadratic probing proof
  ;  E       
Chapter 2.8 Search Algorithms. Array Search –An array contains a certain number of records –Each record is identified by a certain key –One searches the.
String Matching Fundamental Data Structures and Algorithms April 22, 2003.
Boyer Moore Algorithm Idan Szpektor. Boyer and Moore.
MCS 101: Algorithms Instructor Neelima Gupta
Application: String Matching By Rong Ge COSC3100
Strings and Pattern Matching Algorithms Pattern P[0..m-1] Text T[0..n-1] Brute Force Pattern Matching Algorithm BruteForceMatch(T,P): Input: Strings T.
Tries1. 2 Outline and Reading Standard tries (§9.2.1) Compressed tries (§9.2.2) Suffix tries (§9.2.3)
Book: Algorithms on strings, trees and sequences by Dan Gusfield Presented by: Amir Anter and Vladimir Zoubritsky.
MCS 101: Algorithms Instructor Neelima Gupta
Information Retrieval CSE 8337 Spring 2005 Simple Text Processing Material for these slides obtained from: Data Mining Introductory and Advanced Topics.
Exact String Matching Algorithms Presented By Dr. Shazzad Hosain Asst. Prof. EECS, NSU.
Fundamental Data Structures and Algorithms
MA/CSSE 473 Day 25 Student questions Boyer-Moore.
1/39 COMP170 Tutorial 13: Pattern Matching T: P:.
String Searching 2 of 2. String search Simple search –Slide the window by 1 t = t +1; KMP –Slide the window faster t = t + s – M[s] –Never recheck the.
CSG523/ Desain dan Analisis Algoritma
MA/CSSE 473 Day 26 Student questions Boyer-Moore B Trees.
13 Text Processing Hongfei Yan June 1, 2016.
String Processing.
Adviser: R. C. T. Lee Speaker: C. W. Cheng National Chi Nan University
Chapter 7 Space and Time Tradeoffs
Pattern Matching 12/8/ :21 PM Pattern Matching Pattern Matching
The Longest Common Subsequence Problem
Pattern Matching 1/14/2019 8:30 AM Pattern Matching Pattern Matching.
KMP String Matching Donald Knuth Jim H. Morris Vaughan Pratt 1997.
Pattern Matching 2/15/2019 6:17 PM Pattern Matching Pattern Matching.
Tries 2/27/2019 5:37 PM Tries Tries.
Knuth-Morris-Pratt Algorithm.
Chap 3 String Matching 3 -.
String Processing.
Pattern Matching Pattern Matching 5/1/2019 3:53 PM Spring 2007
Space-for-time tradeoffs
Pattern Matching 4/27/2019 1:16 AM Pattern Matching Pattern Matching
Space-for-time tradeoffs
Sequences 5/17/ :43 AM Pattern Matching.
Lecture 4: Matching Algorithms
15-826: Multimedia Databases and Data Mining
MA/CSSE 473 Day 27 Student questions Leftovers from Boyer-Moore
Week 14 - Wednesday CS221.
Presentation transcript:

Boyer Moore Algorithm String Matching Problem Algorithm 3 cases Searching Timing

Problem Find if a string is a sub-string of another Brute force approach would be O(mn)

Boyer Moore Algorithm Start matching from the end 3 cases: “Bad characters” Character appears in sub-string Common suffix

Bad Characters Given String ? ? ? ? ? X ? ? ? ? ? ? and sub-string to match a b c d ? ? ? ? ? X ? ? ? ? ? ? a b c d Next possible match: ? ? ? ? ? X ? ? ? ? ? ? a b c d

Semi-Good Character ? ? ? ? ? c ? ? ? ? ? ? a b c d Shift to next occurrence of that character: ? ? ? ? ? c ? ? ? ? ? ? a b c d Need to pre-process to get “shift values” for each character

Common Suffix Need to find shift values for every common suffix E.g.Sub-string to search for: A B C D B C (!B) C6 (!D) B C3 (!C) D B C6 (!B) C D B C6 (!A) B C D B C6

Searching Start:? ? ? ? ? ? ? ? ? ? ? ? a b c d If bad character: shift length of sub-string Else: shift max (semi-good character, good suffix) Semi-good character <= good suffix (good suffix incorporates semi-good character) If (good suffix shift > semi-good character shift) it overrides semi-good character shift (“knows” more)

Timing Usually O(n/m) because of bad character “leaps”